miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28594_hsa-mir-345:mirbase
Length = 98
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 cccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaa 61
Query: 61 cgaggggtctggaggcctgggtttgaatatcgacagc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 62 cgaggggtctggaggcctgggtttgaatatcgacagc 98
>30961_ppy-mir-345:mirbase
Length = 98
Score = 184 bits (93), Expect = 8e-48
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1 cccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaa 61
Query: 61 cgaggggtctggaggcctgggtttgaatatcgacagc 97
|||||||||||||||||||||||||||||||| ||||
Sbjct: 62 cgaggggtctggaggcctgggtttgaatatcgccagc 98
>27137_eca-mir-345:mirbase
Length = 96
Score = 143 bits (72), Expect = 3e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 5 aaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgag 64
||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||
Sbjct: 5 aaccccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaactag 64
Query: 65 gggtctggaggcctgggtttgaatatcg 92
||||||||||||||||||||||||||||
Sbjct: 65 gggtctggaggcctgggtttgaatatcg 92
>27138_eca-mir-345:mirbase
Length = 96
Score = 143 bits (72), Expect = 3e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 5 aaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgag 64
||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||
Sbjct: 5 aaccccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaactag 64
Query: 65 gggtctggaggcctgggtttgaatatcg 92
||||||||||||||||||||||||||||
Sbjct: 65 gggtctggaggcctgggtttgaatatcg 92
>27857_mml-mir-345:mirbase
Length = 88
Score = 143 bits (72), Expect = 3e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 4 aaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacga 63
|||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 1 aaaccctaggtcggctgactcctagtcaagggctcgtggtggctggtgggccctgaacga 60
Query: 64 ggggtctggaggcctgggtttgaatatc 91
||| ||||||||||||||||||||||||
Sbjct: 61 gggttctggaggcctgggtttgaatatc 88
>33331_bta-mir-345:mirbase
Length = 91
Score = 141 bits (71), Expect = 1e-34
Identities = 87/91 (95%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 cccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaa 60
||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 2 cccaaaccc-aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaa 60
Query: 61 cgaggggtctggaggcctgggtttgaatatc 91
| |||||||||||||||||||||||||||||
Sbjct: 61 ctaggggtctggaggcctgggtttgaatatc 91
>33332_bta-mir-345:mirbase
Length = 91
Score = 141 bits (71), Expect = 1e-34
Identities = 87/91 (95%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 cccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaa 60
||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 2 cccaaaccc-aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaa 60
Query: 61 cgaggggtctggaggcctgggtttgaatatc 91
| |||||||||||||||||||||||||||||
Sbjct: 61 ctaggggtctggaggcctgggtttgaatatc 91
>34066_ssc-mir-345:mirbase
Length = 80
Score = 125 bits (63), Expect = 6e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 11 aggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtct 70
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct: 6 aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggtct 65
Query: 71 ggaggcctgggtttg 85
|||||||||||||||
Sbjct: 66 ggaggcctgggtttg 80
>34067_ssc-mir-345:mirbase
Length = 80
Score = 125 bits (63), Expect = 6e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 11 aggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtct 70
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct: 6 aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggtct 65
Query: 71 ggaggcctgggtttg 85
|||||||||||||||
Sbjct: 66 ggaggcctgggtttg 80
>26808_cfa-mir-345:mirbase
Length = 60
Score = 95.6 bits (48), Expect = 6e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 16 tgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggagg 75
||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 tgctgactcttagtccagtgctcgtgatggctggtgggccctgaactaggggtctggagg 60
>32026_mmu-mir-345:mirbase
Length = 96
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 15 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 74
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
Query: 75 gcctgggtttga 86
|||||||||||
Sbjct: 75 acctgggtttga 86
>32027_mmu-mir-345:mirbase
Length = 96
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 15 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 74
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
Query: 75 gcctgggtttga 86
|||||||||||
Sbjct: 75 acctgggtttga 86
>32872_rno-mir-345:mirbase
Length = 96
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 15 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 74
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
Query: 75 gcctgggtttga 86
|||||||||||
Sbjct: 75 acctgggtttga 86
>32873_rno-mir-345:mirbase
Length = 96
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 15 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 74
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
Query: 75 gcctgggtttga 86
|||||||||||
Sbjct: 75 acctgggtttga 86
