miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01044;mir-345;AC193024.5/98698-98794 9544:Macaca mulatta
(rhesus monkey)
Length = 97
Score = 151 bits (76), Expect = 2e-36
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 4 aaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacga 63
|||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 5 aaaccctaggtcggctgactcctagtcaagggctcgtggtggctggtgggccctgaacga 64
Query: 64 ggggtctggaggcctgggtttgaatatc 91
||||||||||||||||||||||||||||
Sbjct: 65 ggggtctggaggcctgggtttgaatatc 92
>RF01044;mir-345;AAYZ01540228.1/2113-2017 9978:Ochotona princeps
(American pika)
Length = 97
Score = 123 bits (62), Expect = 4e-28
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 3 caaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacg 62
||||||| |||||||||||||||| |||||| ||||| |||||||| ||||||||||||
Sbjct: 4 caaaccccaggtctgctgactcctcgtccagtgctcgagatggctgctgggccctgaact 63
Query: 63 aggggtctggaggcctgggtttgaatatcg 92
|||||||||||||||||||||||||||||
Sbjct: 64 gggggtctggaggcctgggtttgaatatcg 93
>RF01044;mir-345;AAPE01429219.1/603-698 59463:Myotis lucifugus
(little brown bat)
Length = 96
Score = 111 bits (56), Expect = 2e-24
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 cccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaa 60
||||||||| |||||||| |||||||||||||| ||| |||||||||||||||||||| |
Sbjct: 2 cccaaaccc-aggtctgcggactcctagtccagtgcttgtgatggctggtgggccctgca 60
Query: 61 cgaggggtctggaggcctgggtttgaatatcg 92
|||||||||||||||||||| |||||||||
Sbjct: 61 ttaggggtctggaggcctgggtgtgaatatcg 92
>RF01044;mir-345;AAGU02348671.1/3072-3167 9785:Loxodonta africana
(African savanna elephant)
Length = 96
Score = 99.6 bits (50), Expect = 6e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 11 aggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtct 70
||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||| ||
Sbjct: 11 aggtctgctgactcctagtccagtgcttgtgatggccattgggccctgaactaggggcct 70
Query: 71 ggaggcctgggtttgaatatcg 92
|||||||||||||||| |||||
Sbjct: 71 ggaggcctgggtttgattatcg 92
>RF01044;mir-345;ABRO01389073.1/865-964 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 91.7 bits (46), Expect = 2e-18
Identities = 80/89 (89%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 cccaaaccctaggtctgctgactcctagtccagggctcgtg--atggctggtgggccctg 58
||||||||| ||| ||||||||||||||||||| ||||||| |||||||| ||||||||
Sbjct: 2 cccaaaccc-agggctgctgactcctagtccagtgctcgtgctatggctggggggccctg 60
Query: 59 aacgaggggtctggaggcctgggtttgaa 87
| | |||||||||||||||||| ||||||
Sbjct: 61 agctaggggtctggaggcctggctttgaa 89
>RF01044;mir-345;AAKN02051921.1/6097-6192 10141:Cavia porcellus
(domestic guinea pig)
Length = 96
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 5 aaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgag 64
||||| ||| ||||||||||| ||||||| ||||||||| | | ||||||||||| ||
Sbjct: 5 aaccccagggctgctgactcccagtccagtgctcgtgatcccagccgggccctgaactag 64
Query: 65 gggtctggaggcctgggtttgaat 88
||||||||||||||||||||||||
Sbjct: 65 gggtctggaggcctgggtttgaat 88
>RF01044;mir-345;AAIY01055903.1/172-268 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 97
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 15 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 74
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct: 15 ctgctgactcctagtccagtgctcgtgatgggcatagggccctgaactaggggtctggag 74
Query: 75 gcctgggtttgaatatcgaca 95
| ||| | |||||||||||||
Sbjct: 75 gtctgcgcttgaatatcgaca 95
>RF01044;mir-345;AC152061.6/175970-176065 10090:Mus musculus
(house mouse)
Length = 96
Score = 79.8 bits (40), Expect = 6e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 15 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 74
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
Query: 75 gcctgggtttga 86
|||||||||||
Sbjct: 75 acctgggtttga 86
>RF01044;mir-345;AALT01091699.1/386-481 42254:Sorex araneus
(European shrew)
Length = 96
Score = 75.8 bits (38), Expect = 9e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 17 gctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggaggc 76
|||||||| |||||||| |||||||| ||||| |||||||||||| ||||||||||||
Sbjct: 17 gctgactcttagtccagtgctcgtgaaggctgctgggccctgaactgagggtctggaggc 76
Query: 77 ctgggtttga 86
||||| ||||
Sbjct: 77 ctgggcttga 86
>RF01044;mir-345;ABRQ01086688.1/67-160 9813:Procavia capensis
(cape rock hyrax)
Length = 94
Score = 69.9 bits (35), Expect = 6e-12
Identities = 70/79 (88%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 11 aggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtct 70
||||| ||||||||||||||||| |||||||||||| |||| ||||||| ||||||||
Sbjct: 11 aggtcagctgactcctagtccagtgctcgtgatggccattggg-cctgaactaggggtct 69
Query: 71 ggaggcctgggtttgaata 89
||||| || ||||||||||
Sbjct: 70 ggagg-ctaggtttgaata 87
