miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27859_mml-mir-361:mirbase
Length = 72
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 61 ctgatttgctt 71
|||||||||||
Sbjct: 61 ctgatttgctt 71
>27860_mml-mir-361:mirbase
Length = 72
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 61 ctgatttgctt 71
|||||||||||
Sbjct: 61 ctgatttgctt 71
>28596_hsa-mir-361:mirbase
Length = 72
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 61 ctgatttgctt 71
|||||||||||
Sbjct: 61 ctgatttgctt 71
>28597_hsa-mir-361:mirbase
Length = 72
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 61 ctgatttgctt 71
|||||||||||
Sbjct: 61 ctgatttgctt 71
>30963_ppy-mir-361:mirbase
Length = 72
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 61 ctgatttgctt 71
|||||||||||
Sbjct: 61 ctgatttgctt 71
>30964_ppy-mir-361:mirbase
Length = 72
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 61 ctgatttgctt 71
|||||||||||
Sbjct: 61 ctgatttgctt 71
>33334_bta-mir-361:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactt-ataatttgaaaaagtcccccaggtgtgatt 59
Query: 61 ctgatttgctt 71
|||||||||||
Sbjct: 60 ctgatttgctt 70
>34068_ssc-mir-361:mirbase
Length = 80
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactt-ataatttgaaaaagtcccccaggtgtgatt 59
Query: 61 ctgatttgctt 71
|||||||||||
Sbjct: 60 ctgatttgctt 70
>34069_ssc-mir-361:mirbase
Length = 80
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactt-ataatttgaaaaagtcccccaggtgtgatt 59
Query: 61 ctgatttgctt 71
|||||||||||
Sbjct: 60 ctgatttgctt 70
>27141_eca-mir-361:mirbase
Length = 71
Score = 101 bits (51), Expect = 6e-23
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
|||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactg-ataattttaaaaagtcccccaggcgtgatt 59
Query: 61 ctgatttgctt 71
|||||||||||
Sbjct: 60 ctgatttgctt 70
>27142_eca-mir-361:mirbase
Length = 71
Score = 101 bits (51), Expect = 6e-23
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
|||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactg-ataattttaaaaagtcccccaggcgtgatt 59
Query: 61 ctgatttgctt 71
|||||||||||
Sbjct: 60 ctgatttgctt 70
>26811_cfa-mir-361:mirbase
Length = 63
Score = 95.6 bits (48), Expect = 4e-21
Identities = 61/64 (95%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 6 ttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattctgat 65
|||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 1 ttatcagaatctccaggggtacttaa-aatttgaaaaagtcccccaggtgtgattctgat 59
Query: 66 ttgc 69
||||
Sbjct: 60 ttgc 63
>32880_rno-mir-361:mirbase
Length = 70
Score = 79.8 bits (40), Expect = 2e-16
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtac-ttattattt-gaaaagtcccccaggtgtgattct 60
Query: 63 gatt 66
||||
Sbjct: 61 gatt 64
>32031_mmu-mir-361:mirbase
Length = 70
Score = 77.8 bits (39), Expect = 9e-16
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtacttagta--tttgaaaagtcccccaggtgtgattct 60
Query: 63 gatttg 68
||||||
Sbjct: 61 gatttg 66
