miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00659;mir-365;AAIY01424277.1/585-676 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 92
Score = 139 bits (70), Expect = 8e-33
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 16 agcaagaaaaatgagggactttctggggcagctgtgttttctgacttagtcttaatgccc 75
||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||
Sbjct: 3 agcaagaaaaatgagggactttcaggggcagctgtgttttgtgactcagtcataatgccc 62
Query: 76 ctaaaaatccttattgttcttgcagt 101
||||||||||||||||||||||||||
Sbjct: 63 ctaaaaatccttattgttcttgcagt 88
>RF00659;mir-365;AAPE01619298.1/1229-1137 59463:Myotis lucifugus
(little brown bat)
Length = 93
Score = 119 bits (60), Expect = 8e-27
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 16 agcaagaaaaatgagggactttctggggcagctgtgttttctgact-tagtcttaatgcc 74
|||||||||||| |||||||||| |||||||||||||||||||||| |||| |||||||
Sbjct: 3 agcaagaaaaataagggactttcaggggcagctgtgttttctgactcaagtcataatgcc 62
Query: 75 cctaaaaatccttattgttcttgcagtg 102
||||||||||||||||| ||||||||||
Sbjct: 63 cctaaaaatccttattgctcttgcagtg 90
>RF00659;mir-365;AANG01161851.1/1480-1570 9685:Felis catus
(domestic cat)
Length = 91
Score = 115 bits (58), Expect = 1e-25
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 16 agcaagaaaaatgagggactttctggggcagctgtgttttctgacttagtcttaatgccc 75
||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||
Sbjct: 3 agcaagaaaaatgagggactttcaggggcagctgtgttttctgactcagtcataatgccc 62
Query: 76 ctaaaaatcc 85
||||||||||
Sbjct: 63 ctaaaaatcc 72
>RF00659;mir-365;BAAE01286148.1/272-364 8090:Oryzias latipes
(Japanese medaka)
Length = 93
Score = 89.7 bits (45), Expect = 7e-18
Identities = 76/85 (89%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 16 agcaagaaaaatgagggactttctggggcagctgtgtttt-ctgacttagtcttaatgcc 74
|||||||||||||||||||||| |||||||||||||||| | || |||| |||||||
Sbjct: 3 agcaagaaaaatgagggacttttaggggcagctgtgttttattaacccagtcataatgcc 62
Query: 75 cctaaaaatccttattgttcttgca 99
||||||||||||||||| |||||||
Sbjct: 63 cctaaaaatccttattgctcttgca 87
>RF00659;mir-365;AADN02023913.1/98870-98778 9031:Gallus gallus
(chicken)
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 68 taatgcccctaaaaatccttattgttcttgcagt 101
|||||||||||||||||||||||| |||||||||
Sbjct: 56 taatgcccctaaaaatccttattgctcttgcagt 89
>RF00659;mir-365;CU138533.13/80864-80956 7955:Danio rerio
(zebrafish)
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 68 taatgcccctaaaaatccttattgttcttgca 99
|||||||||||||||||||||||| |||||||
Sbjct: 56 taatgcccctaaaaatccttattgctcttgca 87
