miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00735;mir-367;AAGW01417911.1/1409-1476 9986:Oryctolagus
cuniculus (rabbit)
Length = 68
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 ccattactgttgctaatatgcaactctgttgaatataaattggaattgcactttagcaat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 1 ccattactgttgctaatatgcaactctgttgaatatatattggaattgcacattagcaat 60
Query: 61 ggtgatg 67
|||||||
Sbjct: 61 ggtgatg 67
>RF00735;mir-367;AADN02009328.1/24642-24709 9031:Gallus gallus
(chicken)
Length = 68
Score = 101 bits (51), Expect = 1e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 5 tactgttgctaatatgcaactctgttgaatataaattggaattgcactttagcaatggtg 64
|||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 5 tactgttgctaacatgcaactctgttgtataaaaattggaattgcactttagcaatggtg 64
Query: 65 atg 67
|||
Sbjct: 65 atg 67
>RF00735;mir-367;AAIY01685397.1/7052-6985 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 68
Score = 97.6 bits (49), Expect = 2e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 5 tactgttgctaatatgcaactctgttgaatataaattggaattgcactttagcaatggtg 64
|||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 5 tactgttgctaacatgcaactctgttcaatttaaattggaattgcactttagcaatggtg 64
Query: 65 a 65
|
Sbjct: 65 a 65
>RF00735;mir-367;ABVD01917286.1/669-603 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 67
Score = 91.7 bits (46), Expect = 1e-18
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 1 ccattactgttgctaatatgcaactctgttgaatataaattggaattgcacttt 54
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 1 ccattactgttgctaatatgcaactctgttcaatataaactggaattgcacttt 54
>RF00735;mir-367;AANN01821362.1/2035-1968 9365:Erinaceus europaeus
(western European hedgehog)
Length = 68
Score = 85.7 bits (43), Expect = 6e-17
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 5 tactgttgctaatatgcaactctgttgaatataaattggaattgcactttagcaatggtg 64
||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 5 tactgttgctaatgtgcaactctgttcagtaccaattggaattgcactttagcaatggtg 64
Query: 65 atg 67
|||
Sbjct: 65 atg 67
>RF00735;mir-367;ABRN01119546.1/243-176 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 68
Score = 85.7 bits (43), Expect = 6e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 1 ccattactgttgctaatatgcaactctgttgaatataaattggaattgcactttagcaat 60
||||||||||||| |||||||||||||||| |||| |||||||||||| |||||||||
Sbjct: 1 ccattactgttgccaatatgcaactctgttcaatacaaattggaattgtgttttagcaat 60
Query: 61 ggtgatg 67
|||||||
Sbjct: 61 ggtgatg 67
>RF00735;mir-367;AAWZ01008661.1/78859-78792 28377:Anolis
carolinensis (green anole)
Length = 68
Score = 79.8 bits (40), Expect = 4e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 4 ttactgttgctaatatgcaactctgttgaatataaattggaattgcactttagcaatggt 63
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 4 ttactgttgctaatgtgcaactctgttatgtataatctggaattgcactttagcaatggt 63
Query: 64 gatg 67
||||
Sbjct: 64 gatg 67
>RF00735;mir-367;AAHX01020222.1/16082-16015 10116:Rattus
norvegicus (Norway rat)
Length = 68
Score = 67.9 bits (34), Expect = 1e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 6 actgttgctaatatgcaactctgttgaatataaattggaattgcactttagcaatggtga 65
|||| ||||||| |||||||||||||| | | | |||||||||||||||||||||||||
Sbjct: 6 actgctgctaatctgcaactctgttgagcacacactggaattgcactttagcaatggtga 65
Query: 66 tg 67
||
Sbjct: 66 tg 67
>RF00735;mir-367;ABRP01199153.1/3576-3511 132908:Pteropus vampyrus
(large flying fox)
Length = 66
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 ttactgttgctaatatgcaactctgtt 30
|||||||||||||||||||||||||||
Sbjct: 4 ttactgttgctaatatgcaactctgtt 30
>RF00735;mir-367;AAPY01684075.1/7711-7646 37347:Tupaia belangeri
(northern tree shrew)
Length = 66
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tggaattgcactttagcaatggtga 65
|||||||||||||||||||||||||
Sbjct: 39 tggaattgcactttagcaatggtga 63
>RF00735;mir-367;AAKN02038884.1/104135-104068 10141:Cavia
porcellus (domestic guinea pig)
Length = 68
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tggaattgcactttagcaatggtga 65
|||||||||||||||||||||||||
Sbjct: 41 tggaattgcactttagcaatggtga 65
