miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00665;mir-290;CABD01090865.1/1100-1020 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 81
Score = 131 bits (66), Expect = 1e-30
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 tggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttgag 68
Query: 61 tgttac 66
||||||
Sbjct: 69 tgttac 74
>RF00665;mir-290;AANU01181644.1/1881-1964 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 101 bits (51), Expect = 1e-21
Identities = 65/69 (94%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 1 tggcactcaaactgtgggggcactttctgctctctggtg---aaagtgccgccatctttt 57
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 9 tggcactcaaactgtgggggcactttctgctctctggtgaaaaaagtgccgccatgtttt 68
Query: 58 gagtgttac 66
|||||||||
Sbjct: 69 gagtgttac 77
>RF00665;mir-290;ABDC01467998.1/1387-1307 30608:Microcebus murinus
(gray mouse lemur)
Length = 81
Score = 67.9 bits (34), Expect = 1e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 1 tggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttgag 60
||||||||||||||||||||||||||||| | | || ||||||||||| | |||||||
Sbjct: 9 tggcactcaaactgtgggggcactttctgttatgtgacgaaagtgccgctactttttgag 68
Query: 61 tgttac 66
||||||
Sbjct: 69 tgttac 74
>RF00665;mir-290;AC191152.6/69098-69179 9615:Canis lupus
familiaris (dog)
Length = 82
Score = 61.9 bits (31), Expect = 9e-10
Identities = 56/62 (90%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 4 cactcaaactgtgggggcactttctgctctctggt--gaaagtgccgccatcttttgagt 61
|||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||
Sbjct: 12 cactcaaactgtgggggcactttctgttct-aggtaggaaagtgccgccattttttgagt 70
Query: 62 gt 63
||
Sbjct: 71 gt 72
>RF00665;mir-290;AAQR01736199.1/983-1063 30611:Otolemur garnettii
(small-eared galago)
Length = 81
Score = 60.0 bits (30), Expect = 3e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 4 cactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttgagtgt 63
|||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 12 cactcaaactgtgggggcactttctggtctacaacgaaagtgccgccactttttgagtgt 71
Query: 64 ta 65
||
Sbjct: 72 ta 73
>RF00665;mir-290;AALT01169508.1/1570-1488 42254:Sorex araneus
(European shrew)
Length = 83
Score = 56.0 bits (28), Expect = 5e-08
Identities = 55/60 (91%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 5 actcaaactgtgggggcactttctg-ctctctgg-tgaaagtgccgccatcttttgagtg 62
||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||||
Sbjct: 14 actcaaactgtgggggcactttctgtctc-ctggaggaaagtgccgccattttttgagtg 72
>RF00665;mir-290;ACBE01428472.1/1582-1663 9685:Felis catus
(domestic cat)
Length = 82
Score = 56.0 bits (28), Expect = 5e-08
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 5 actcaaactgtgggggcactttctgctctctg-gtgaaagtgccgccatcttttgagtgt 63
||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||
Sbjct: 13 actcaaactgtgggggcactttctgttctaagtaggaaagtgccgccattttttgagtgt 72
>RF00665;mir-290;AAPY01553483.1/1697-1619 37347:Tupaia belangeri
(northern tree shrew)
Length = 79
Score = 54.0 bits (27), Expect = 2e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 4 cactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttgagtgt 63
||||||||||||||||||||||| | | ||| |||||||||||||| ||||||||||
Sbjct: 12 cactcaaactgtgggggcactttttccg-tctaaagaaagtgccgccattttttgagtgt 70
Query: 64 tac 66
|||
Sbjct: 71 tac 73
>RF00665;mir-290;AANN01201868.1/2038-1956 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 cactcaaactgtgggggcactttctg 29
||||||||||||||||||||||||||
Sbjct: 12 cactcaaactgtgggggcactttctg 37
>RF00665;mir-290;ABRN01338600.1/10040-9960 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 81
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 aagtgccgccatcttttgagtgttac 66
||||||||||||||||||||||||||
Sbjct: 49 aagtgccgccatcttttgagtgttac 74
>RF00665;mir-290;ABRT010900982.1/881-962 9478:Tarsius syrichta
(Philippine tarsier)
Length = 82
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tggcactcaaactgtgggggcacttt 26
||||||||||||||||||||||||||
Sbjct: 9 tggcactcaaactgtgggggcacttt 34
>RF00665;mir-290;ABRO01361721.1/480-394 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 87
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tggcactcaaactgtgggggcacttt 26
||||||||||||||||||||||||||
Sbjct: 9 tggcactcaaactgtgggggcacttt 34
>RF00665;mir-290;ABRQ01217814.1/3466-3387 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 gcactcaaactgtgggggcactttct 28
||||||||||||||||||||||||||
Sbjct: 11 gcactcaaactgtgggggcactttct 36
>RF00665;mir-290;AAWR02030859.1/16284-16365 9796:Equus caballus
(horse)
Length = 82
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 actcaaactgtgggggcactttctg 29
|||||||||||||||||||||||||
Sbjct: 13 actcaaactgtgggggcactttctg 37
>RF00665;mir-290;AAIY01463435.1/1145-1228 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 84
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 3 gcactcaaactgtgggggcactttctgctctct 35
||||||||||| ||||||||||||||| |||||
Sbjct: 11 gcactcaaactttgggggcactttctgttctct 43
>RF00665;mir-290;AAFC03106078.1/3411-3491 9913:Bos taurus (cattle)
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 aagtgccgccatcttttgagtgttac 66
|||||||||||| |||||||||||||
Sbjct: 49 aagtgccgccatgttttgagtgttac 74
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 actcaaactgtgggggcactt 25
|||||||||||||||||||||
Sbjct: 13 actcaaactgtgggggcactt 33
>RF00665;mir-290;AAPE01483022.1/895-815 59463:Myotis lucifugus
(little brown bat)
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 actcaaactgtgggggcactttctg 29
|||||||||| ||||||||||||||
Sbjct: 13 actcaaactgggggggcactttctg 37
>RF00665;mir-290;AAQQ01729328.1/1050-1131 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 82
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 ctcaaactgtgggggcacttt 26
|||||||||||||||||||||
Sbjct: 14 ctcaaactgtgggggcacttt 34
