miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00665;mir-290;AANU01181645.1/2886-2964 9544:Macaca mulatta
(rhesus monkey)
Length = 79
Score = 105 bits (53), Expect = 6e-23
Identities = 60/61 (98%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 5 cctcaaatgtggagcactattctgatgtccaagtggaaagtgctgcgacatttgagcgtc 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 13 cctcaaatgtggagcactattctgatgtccaagtggaaagtgctgcgaca-ttgagcgtc 71
Query: 65 a 65
|
Sbjct: 72 a 72
>RF00665;mir-290;EU086472.1/195994-196074 9509:Ateles geoffroyi
(black-handed spider monkey)
Length = 81
Score = 77.8 bits (39), Expect = 1e-14
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tgggcctcaaatgtggagcactatt-ctgatgtccaagtggaaagtgctgcgacatttga 59
||||||||||||||||||||||||| | |||||||| |||||||||||| | ||||||||
Sbjct: 9 tgggcctcaaatgtggagcactattcccgatgtccaggtggaaagtgctacaacatttga 68
Query: 60 gcgtcac 66
|| ||||
Sbjct: 69 gcatcac 75
>RF00665;mir-290;AAPY01553483.1/1557-1477 37347:Tupaia belangeri
(northern tree shrew)
Length = 81
Score = 61.9 bits (31), Expect = 9e-10
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 5 cctcaaatgtgg-agcactattctgatgtccaagtggaaagtgctgcgacatttgagcgt 63
|||||||||||| |||||| |||||| ||| |||||||||||||||| ||||||||| ||
Sbjct: 13 cctcaaatgtgggagcactcttctgacgtc-aagtggaaagtgctgcaacatttgagtgt 71
Query: 64 cac 66
|||
Sbjct: 72 cac 74
>RF00665;mir-290;AAWR02030859.1/16491-16572 9796:Equus caballus
(horse)
Length = 82
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 tggaaagtgctgcgacatttgag 60
|||||||||||||||||||||||
Sbjct: 47 tggaaagtgctgcgacatttgag 69
