miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 145 bits (73), Expect = 9e-35
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 1 ctaaattgttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 19 ctaaattgttgtcgaaatattacatgtatctagacgctttttaagaatagatatatccat 78
Query: 61 atttgggcaaatttgag 77
|||||||||||||||||
Sbjct: 79 atttgggcaaatttgag 95
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 137 bits (69), Expect = 2e-32
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 1 ctaaattgttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccat 60
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 19 ctaaattattgtcgaaatattacatgtatctagacgcgttttaagaatagatacatccat 78
Query: 61 atttgggcaaatttgag 77
|||||||||||||||||
Sbjct: 79 atttgggcaaatttgag 95
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 115 bits (58), Expect = 8e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 4 aattgttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 22 aattcttgtcgaaatattacatgtatctagacgctttttaggaatagatacatccaattt 81
Query: 64 tgggcaaatttgag 77
||||||||||||||
Sbjct: 82 tgggcaaatttgag 95
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 115 bits (58), Expect = 8e-26
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 8 gttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttggg 67
|||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||
Sbjct: 100 gttgtcgaaatattacatgtatctagacgctttttaggcatagatacatccatatctggg 41
Query: 68 caaatttgag 77
||||||||||
Sbjct: 40 caaatttgag 31
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 111 bits (56), Expect = 1e-24
Identities = 65/68 (95%)
Strand = Plus / Minus
Query: 10 tgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggca 69
||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct: 97 tgtcgaaatattacatgtatctagatgctttttaggtatagatacatccatatttgggca 38
Query: 70 aatttgag 77
||||||||
Sbjct: 37 aatttgag 30
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 103 bits (52), Expect = 3e-22
Identities = 58/60 (96%)
Strand = Plus / Minus
Query: 18 tattacatgtatctagacgctttttaagaatagatacatccatatttgggcaaatttgag 77
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 90 tattacatgtatctagacgctttttaagcatagatacatccatatttggacaaatttgag 31
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 99.6 bits (50), Expect = 5e-21
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 4 aattgttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| ||||||||||||| |||||||||| |||| ||||| |||||||||||||||| ||
Sbjct: 104 aattcttgtcgaaatattgcatgtatctaaacgccttttaggaatagatacatccatttt 45
Query: 64 tgggcaaatttgag 77
||||||||||||||
Sbjct: 44 tgggcaaatttgag 31
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 9 ttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 27 ttgtcaaaatattacatgtatctaaacgctttttaggcatagatacatccatatttggga 86
Query: 69 aaatttgag 77
|||||||||
Sbjct: 87 aaatttgag 95
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 9 ttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
|||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||
Sbjct: 27 ttgtcgaaatattacatgtatctagacgctttttaaacatagatgcattcgtatttgggc 86
Query: 69 aaatttgag 77
|||||||||
Sbjct: 87 aaatttgag 95
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 95.6 bits (48), Expect = 8e-20
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 10 tgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggca 69
|||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||
Sbjct: 98 tgtcgaaatattacatgtatctagacgcattttagaaatagatacatccatctttgagca 39
Query: 70 aatttgag 77
||||||||
Sbjct: 38 aatttgag 31
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 91.7 bits (46), Expect = 1e-18
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 4 aattgttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| |||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||
Sbjct: 104 aattcttgtcgaaatcttacatgtatctagacactttttatgaatagatacatccatttt 45
Query: 64 tgggcaaatttgag 77
|| |||| ||||||
Sbjct: 44 tgagcaactttgag 31
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 91.7 bits (46), Expect = 1e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 4 aattgttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| |||| |||||||||||||||||||||| ||||||| |||||||||||| ||| ||
Sbjct: 22 aattcttgttgaaatattacatgtatctagacactttttaggaatagatacattcatttt 81
Query: 64 tgggcaaatttgag 77
||| ||||||||||
Sbjct: 82 tggtcaaatttgag 95
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 12 tcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggcaaa 71
||||||||||||||||||||| |||||||||| | ||| ||||||||||||||||||||
Sbjct: 96 tcgaaatattacatgtatctaaacgctttttacgcatatatacatccatatttgggcaat 37
Query: 72 tttgag 77
||||||
Sbjct: 36 tttgag 31
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 85.7 bits (43), Expect = 7e-17
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 9 ttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
|||||||||||||||||||||||||| ||||||||| || || ||||||||| ||||||
Sbjct: 99 ttgtcgaaatattacatgtatctagatgctttttaaacattgacacatccataattgggc 40
Query: 69 aaatttg 75
|||||||
Sbjct: 39 aaatttg 33
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 85.7 bits (43), Expect = 7e-17
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 9 ttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttggg 67
||||| |||||||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct: 89 ttgtcaaaatattacatgtatctagacgttttttatgcatagatacatccatatttggg 31
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 83.8 bits (42), Expect = 3e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 4 aattgttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| ||||||||||||||||||||||||||| | | | |||||||||||||||| ||
Sbjct: 22 aattcttgtcgaaatattacatgtatctagacacctcgaaggaatagatacatccatttt 81
Query: 64 tgggcaaatttgag 77
||||||||||||||
Sbjct: 82 tgggcaaatttgag 95
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 83.8 bits (42), Expect = 3e-16
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 4 aattgttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| |||||||||| ||||||||||||||||| |||||| ||||| |||||||||| ||
Sbjct: 104 aattcttgtcgaaatcttacatgtatctagacgttttttatgaatatatacatccatttt 45
Query: 64 tgggcaaatt 73
||| ||||||
Sbjct: 44 tggacaaatt 35
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 83.8 bits (42), Expect = 3e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 4 aattgttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| ||||||||| ||||| ||||||||||||||||||| ||||||||||| || ||
Sbjct: 22 aattcttgtcgaaacattacgtgtatctagacgctttttagtaatagatacattcaattt 81
Query: 64 tgggcaaatttgag 77
||||||||||||||
Sbjct: 82 tgggcaaatttgag 95
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 83.8 bits (42), Expect = 3e-16
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 4 aattgttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| ||||| ||||||||||||||||||||| ||||||| |||||||||||| || ||
Sbjct: 104 aattcttgtcaaaatattacatgtatctagacactttttagaaatagatacatctatttt 45
Query: 64 tgggcaaatttgag 77
|| |||||||||||
Sbjct: 44 tgagcaaatttgag 31
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 9 ttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
||||||||||||||||||||||||||| ||||||| ||||||||| | |||||||||
Sbjct: 27 ttgtcgaaatattacatgtatctagacactttttacacgtagatacattcgtatttgggc 86
Query: 69 aaatttgag 77
|||||||||
Sbjct: 87 aaatttgag 95
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/76 (89%), Gaps = 2/76 (2%)
Strand = Plus / Minus
Query: 4 aattgttgtcgaaatattacatgtatctagac--gctttttaagaatagatacatccata 61
|||| ||||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 106 aattcttgtcgaaatattacatgtatctagacgtgttttttaggaatagatacatccatt 47
Query: 62 tttgggcaaatttgag 77
|||||| ||||||||
Sbjct: 46 tttgggttaatttgag 31
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 9 ttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
||||||||||||||||||||||||||| ||||||| |||||||||| | ||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagactctttttacacatagatacattcgtatttggac 86
Query: 69 aaatttgag 77
|||||||||
Sbjct: 87 aaatttgag 95
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 79.8 bits (40), Expect = 4e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 18 tattacatgtatctagacgctttttaagaatagatacatccatatttgggcaaatttgag 77
|||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct: 36 tattacatgtatctagacactttttagacatagatacatccatatttggacaaatttgag 95
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 73.8 bits (37), Expect = 3e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 9 ttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
|||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||
Sbjct: 27 ttgtcgaaatattatatgtatctagacg-tttttacacatagatacatccgcatttgggc 85
Query: 69 aaatttgag 77
|||||||||
Sbjct: 86 aaatttgag 94
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 9 ttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
||||||||||||||||| ||||||| | |||||||| |||||||||| |||||||| |
Sbjct: 27 ttgtcgaaatattacatttatctagtcactttttaaacatagatacattcatatttgatc 86
Query: 69 aaatttgag 77
|||||||||
Sbjct: 87 aaatttgag 95
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 65.9 bits (33), Expect = 7e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 9 ttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
|||||||||||||||||||||| |||| ||||||| | ||| ||||||| |||||||| |
Sbjct: 98 ttgtcgaaatattacatgtatccagac-ctttttaggtataaatacatctatatttggac 40
Query: 69 aaatt 73
|||||
Sbjct: 39 aaatt 35
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 63.9 bits (32), Expect = 3e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 11 gtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgg 66
|||||||||||||||||||||||| ||||| | ||||||||||||||| |||||
Sbjct: 95 gtcgaaatattacatgtatctagatatttttttaaaatagatacatccatttttgg 40
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 63.9 bits (32), Expect = 3e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 13 cgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggcaaat 72
|||||||||||||||||||||||||||||| | ||||||||| ||||||||| | |||
Sbjct: 94 cgaaatattacatgtatctagacgctttttga-tatagatacaatcatatttggacgaat 36
Query: 73 ttga 76
||||
Sbjct: 35 ttga 32
>RF00906;MIR1122;EF059989.1/74343-74464 29664:Brachypodium
sylvaticum
Length = 122
Score = 61.9 bits (31), Expect = 1e-09
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 10 tgtcgaaatattacatgtatctagacgctttttaagaatagatacatccat 60
|||| ||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 95 tgtcaaaacattacatgtatctagacgttttttaactatagatacatccat 45
>RF00906;MIR1122;EU730902.1/30283-30160 15368:Brachypodium
distachyon
Length = 124
Score = 60.0 bits (30), Expect = 4e-09
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 4 aattgttgtcgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| |||||||||||| | ||| ||||| |||||||||| ||||| ||||| ||| ||
Sbjct: 103 aattcttgtcgaaatatcagatgcatctaaacgctttttagaaatagctacat-catttt 45
Query: 64 tgggcaaatttgag 77
||||||||||||||
Sbjct: 44 tgggcaaatttgag 31
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 56.0 bits (28), Expect = 6e-08
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 18 tattacatgtatctagacgctttttaagaatagatacatccatatttg 65
||||||||| |||||||| |||||| | |||||||||||||||||||
Sbjct: 90 tattacatgcatctagacattttttaggcatagatacatccatatttg 43
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 54.0 bits (27), Expect = 3e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 12 tcgaaatattacatgtatctagacgctttttaaga-atagatacatccatatttgggcaa 70
||||||||||||||||||||||||| ||||| | |||||||| ||||| ||| | |||
Sbjct: 30 tcgaaatattacatgtatctagacgtattttagtatatagatacgtccatttttagacaa 89
Query: 71 atttgag 77
|||||||
Sbjct: 90 atttgag 96
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 50.1 bits (25), Expect = 4e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 18 tattacatgtatctagacgctttttaaga-atagatacatccatatttgggcaaatttga 76
||||||||||||||||||| ||| || | |||||||| ||||||||| | |||||||||
Sbjct: 36 tattacatgtatctagacgttttctagtatatagatacgtccatatttagacaaatttga 95
Query: 77 g 77
|
Sbjct: 96 g 96
