miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 11 ggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtt 71
Query: 71 ttcagtatc 79
|||||||||
Sbjct: 72 ttcagtatc 80
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 129 bits (65), Expect = 6e-30
Identities = 75/77 (97%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 gtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 60
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 2 gtatttaaaaggtagattttccttttatggttacgt-tttgatggttaatcatagaggaa 60
Query: 61 aatccacgttttcagta 77
|||||||||||||||||
Sbjct: 61 aatccacgttttcagta 77
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 117 bits (59), Expect = 2e-26
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 1 gtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 60
||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct: 2 gtatttaaaaggtggattttccttctatgtttacgtgattgctggttaatcatagaggaa 61
Query: 61 aatccacgttttcagtatc 79
|||||| ||||||||||||
Sbjct: 62 aatccatgttttcagtatc 80
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 109 bits (55), Expect = 5e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 1 gtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 60
||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||
Sbjct: 2 gtatttaaaaggtagattttccttcaatgattacgtgttgcctggttaatcatagaggaa 61
Query: 61 aatccacgttttcagtatc 79
||||||| |||||||||||
Sbjct: 62 aatccacattttcagtatc 80
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 93.7 bits (47), Expect = 3e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1 gtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 60
||||||||||||| ||| ||||||||||||||||||| || ||| ||||||||||||||
Sbjct: 2 gtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagaggaa 61
Query: 61 aatccacgttttcagtatc 79
|||||| |||||||||||
Sbjct: 62 catccactttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 93.7 bits (47), Expect = 3e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1 gtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 60
|||||||||||||||||| |||||||||| ||| | || ||| |||||||||||||||
Sbjct: 2 gtatttaaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaa 61
Query: 61 aatccacgttttcagtatc 79
|||||||||||||||||||
Sbjct: 62 aatccacgttttcagtatc 80
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 1 gtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 60
||||||||||||| ||||||||||| ||| |||| |||| | |||||||||||||||
Sbjct: 2 gtatttaaaaggtggattttccttccatgattacatgttgccttcttaatcatagaggaa 61
Query: 61 aatccacgttttcagtatc 79
| |||||||||||||||||
Sbjct: 62 attccacgttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 1 gtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 60
||||||||||||| ||| ||||||||||| ||| || || |||||||| ||||||||||
Sbjct: 2 gtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaa 61
Query: 61 aatccacgttttcagtatc 79
| ||||| |||||||||||
Sbjct: 62 attccacattttcagtatc 80
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 75.8 bits (38), Expect = 7e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 taaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcc 65
|||||||| ||| ||||||||||| |||| | || ||||||||||||||||||||||||
Sbjct: 7 taaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcc 66
Query: 66 acgttttcagtatc 79
|| || ||||||||
Sbjct: 67 acattgtcagtatc 80
>RF00641;mir-154;AAKN02051949.1/111080-111159 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 73.8 bits (37), Expect = 3e-13
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 1 gtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 60
||||||||||||| ||||||||| ||||| ||| | || | |||||||||||| ||||
Sbjct: 2 gtatttaaaaggtggattttcctcctatgattatgcattggctggttaatcatacgggaa 61
Query: 61 aatccacgttttcagta 77
|||||||||||||||||
Sbjct: 62 aatccacgttttcagta 78
>RF00641;mir-154;ABRQ01054372.1/1857-1937 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 71.9 bits (36), Expect = 1e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 gtatttaaaaggtagattttccttctatggtt-acgtgtttgatggttaatcatagagga 59
||||||||||||| ||||||||| ||||| || || || || |||||||||||||||||
Sbjct: 2 gtatttaaaaggtggattttcctcctatgttttacatgcttcgtggttaatcatagagga 61
Query: 60 aaatccacgttttcagtatc 79
||||||| |||||||||||
Sbjct: 62 aaatccatattttcagtatc 81
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 19 ttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtttt 72
||||||||||| ||||| | || || ||||||||||||||||||||||||||||
Sbjct: 20 ttccttctatgtttacgggatttatagttaatcatagaggaaaatccacgtttt 73
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 7 aaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcca 66
||||||| ||| ||||||||||| |||| | || ||||||||||||||||||||||||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 67 cgttttcag 75
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 63.9 bits (32), Expect = 3e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 8 aaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatccac 67
|||||| ||||||||||||||| |||| | || |||||||| |||||||||||||||||
Sbjct: 9 aaaggtggattttccttctatgtttacagggtttatggttaagcatagaggaaaatccac 68
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 gttaatcatagaggaaaatccacgttttc 73
|||||||||||||||||||||||||||||
Sbjct: 47 gttaatcatagaggaaaatccacgttttc 75
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 7 aaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcca 66
||||||| ||| ||||||||||| |||| || || ||||||||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatgtttacagaatttatagttaatcatagaggaaaatcca 67
Query: 67 cgttttcag 75
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;ABRN01448850.1/16136-16215 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 45 gttaatcatagaggaaaatccacgttttcagtatc 79
||||| ||||||||||||||||| |||||||||||
Sbjct: 46 gttaagcatagaggaaaatccacattttcagtatc 80
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 2 tatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaa 61
|||| ||||||| ||| ||||||||||| |||| | |||| | ||| |||||||||||
Sbjct: 3 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 62
Query: 62 atccacgttttcagtatc 79
|||||| |||| ||||||
Sbjct: 63 atccacattttaagtatc 80
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 19 ttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtttt 72
||||||||||| |||| | || |||||||||||||||||||||| ||| ||||
Sbjct: 17 ttccttctatgtttacaggatttatggttaatcatagaggaaaattcacatttt 70
>RF00641;mir-154;AANN01196583.1/1560-1639 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 1 gtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 60
||||||||||||| ||| || |||||||| ||| | || |||||||| | ||||||||
Sbjct: 2 gtatttaaaaggtggatatttcttctatgtttattggattcatggttaaacgtagaggaa 61
Query: 61 aatccacgttttcagtatc 79
||||| |||||||||||
Sbjct: 62 gttccactttttcagtatc 80
>RF00641;mir-154;CABD01018504.1/18447-18522 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 76
Score = 46.1 bits (23), Expect = 6e-05
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 6 taaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 60
|||||||| ||| ||||||||||| |||| | || ||||||||||| |||||||
Sbjct: 6 taaaaggtggatgttccttctatgcttacaggatttatggttaatcacagaggaa 60
>RF00641;mir-154;AAGV020362611.1/5630-5708 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 42 atggttaatcatagaggaaaatccacgttttcagtatc 79
|||||||||||||||||||| ||| | |||| ||||||
Sbjct: 42 atggttaatcatagaggaaactccccatttttagtatc 79
