miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 121 bits (61), Expect = 1e-27
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattccac 68
Query: 61 gtttt 65
||||
Sbjct: 69 atttt 73
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 67.9 bits (34), Expect = 1e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 4 ggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattccacgtt 63
||||||| ||||||||||||||| | |||||| ||||| ||||||||||| ||||||||
Sbjct: 12 ggtggatgttccttctatgtttacgggatttatagttaatcatagaggaaaatccacgtt 71
Query: 64 tt 65
||
Sbjct: 72 tt 73
>RF00641;mir-154;AANN01196583.1/1560-1639 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 65.9 bits (33), Expect = 5e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattccac 60
||||||||||||| ||||||||||||| ||| |||||||||| |||||||| ||||||
Sbjct: 9 aaaggtggatatttcttctatgtttattggattcatggttaaacgtagaggaagttccac 68
Query: 61 gtttt 65
||||
Sbjct: 69 ttttt 73
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 65.9 bits (33), Expect = 5e-11
Identities = 54/57 (94%), Gaps = 3/57 (5%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattc 57
|||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 9 aaaggtggatattccttctatg-ttatg-tatttatggtt-aacatagaggaaattc 62
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 65.9 bits (33), Expect = 5e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattccac 60
|||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||
Sbjct: 9 aaaggtggatattccttctatgtttacagaatttatagttaatcatagaggaaaatccac 68
Query: 61 gtttt 65
||||
Sbjct: 69 atttt 73
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 65.9 bits (33), Expect = 5e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattccac 60
|||||||||| ||||||||||||||| || ||| ||||||| ||||||||||| ||||
Sbjct: 9 aaaggtggattttccttctatgtttacgtgattgctggttaatcatagaggaaaatccat 68
Query: 61 gtttt 65
|||||
Sbjct: 69 gtttt 73
>RF00641;mir-154;ABRQ01054372.1/730-809 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 65.9 bits (33), Expect = 5e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatgtttatgttatttatg 37
||||||||||||||||||||||||||||| |||||||
Sbjct: 9 aaaggtggatattccttctatgtttatgtgatttatg 45
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 58.0 bits (29), Expect = 1e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattccac 60
|||||||||| ||||||||||||||| |||| ||||||| ||||||||||| |||||
Sbjct: 9 aaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatccac 68
Query: 61 gtttt 65
||||
Sbjct: 69 atttt 73
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 56.0 bits (28), Expect = 5e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattccac 60
|||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 9 aaaggtggattttccttctatgtttacagggtttatggttaagcatagaggaaaatccac 68
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 56.0 bits (28), Expect = 5e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattccac 60
|||||||||| ||||||||||| ||| |||||||||||| ||||||||||| |||||
Sbjct: 9 aaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatccac 68
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatgttta 26
||||||||||||||||||||||||||
Sbjct: 9 aaaggtggatattccttctatgttta 34
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 52.0 bits (26), Expect = 8e-07
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 5 gtggatattccttctatgtttatgttatttatggttaaacatagaggaaa 54
|||||| ||||||||||||||| |||||||||||| |||||||||||
Sbjct: 10 gtggatgttccttctatgtttacaggatttatggttaatcatagaggaaa 59
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 52.0 bits (26), Expect = 8e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 12 ttccttctatgtttatgttatttatggttaaacatagaggaaattccacgtttt 65
||||||||||| ||| || || |||||||| ||||||||||| ||||||||||
Sbjct: 20 ttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtttt 73
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 50.1 bits (25), Expect = 3e-06
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattccac 60
|||||| ||| |||||| |||| ||| ||| || |||||||| ||||||||||| |||||
Sbjct: 9 aaaggtagattttccttttatggttacgtt-ttgatggttaatcatagaggaaaatccac 67
Query: 61 gtttt 65
|||||
Sbjct: 68 gtttt 72
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 29 ttatttatggttaaacatagaggaaattccacgtttt 65
||||||||| |||| ||||||||||| ||||||||||
Sbjct: 37 ttatttatgattaatcatagaggaaaatccacgtttt 73
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 ttaaacatagaggaaattccacgtttt 65
|||| ||||||||||||||||||||||
Sbjct: 47 ttaatcatagaggaaattccacgtttt 73
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatg 22
||||||||||||||||||||||
Sbjct: 9 aaaggtggatattccttctatg 30
>RF00641;mir-154;AAGV020362611.1/5630-5708 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 79
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 26 atgttatttatggttaaacatagaggaaa 54
|||| |||||||||||| |||||||||||
Sbjct: 33 atgtgatttatggttaatcatagaggaaa 61
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 aaggtggatattccttctatgttta 26
||||||||| |||||||||||||||
Sbjct: 10 aaggtggatgttccttctatgttta 34
>RF00641;mir-154;CABD01018504.1/18447-18522 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 76
Score = 42.1 bits (21), Expect = 8e-04
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 1 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaa 53
|||||||||| ||||||||||| ||| |||||||||||| || |||||||
Sbjct: 8 aaaggtggatgttccttctatgcttacaggatttatggttaatcacagaggaa 60
