miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054373.1/1454-1532 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 115 bits (58), Expect = 8e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 1 acttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaa 60
|||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 4 acttaaagtgaggttgccctttgtatattcggttttttgacatagaatatacaagggcaa 63
Query: 61 gctctctgtgagta 74
|||||||| |||||
Sbjct: 64 gctctctgggagta 77
>RF00641;mir-154;AAGV020362614.1/822-900 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 79
Score = 107 bits (54), Expect = 2e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 7 agcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaagctctc 66
||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 10 agcgaggttaccctttgtgtattcggtttattgacgtggaatatacaagggcaagctctc 69
Query: 67 tgtgag 72
||||||
Sbjct: 70 tgtgag 75
>RF00641;mir-154;ABRO01197048.1/1145-1223 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 79
Score = 107 bits (54), Expect = 2e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 1 acttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaa 60
|||||||||||||||||||||||||||||||| || || |||| | ||||||||||||||
Sbjct: 4 acttaaagcgaggttgccctttgtatattcggcttcttcacattggatatacaagggcaa 63
Query: 61 gctctctgtgagta 74
||||||||||||||
Sbjct: 64 gctctctgtgagta 77
>RF00641;mir-154;AAIY01699599.1/3364-3441 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 78
Score = 107 bits (54), Expect = 2e-23
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 acttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaa 60
|||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct: 4 acttaacgcgaggttgcc-ttggtatattcggtttattgacgtggaatatacaagggcaa 62
Query: 61 gctctctgtgagta 74
||||||||||||||
Sbjct: 63 gctctctgtgagta 76
>RF00641;mir-154;AAGU02275630.1/1197-1275 9785:Loxodonta africana
(African savanna elephant)
Length = 79
Score = 95.6 bits (48), Expect = 7e-20
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1 acttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaa 60
||||| || |||||| || ||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 4 acttagagtgaggttaccatttgtatattcagtttcttgacatggaatatacaagggcaa 63
Query: 61 gctctctgtgag 72
||||||||||||
Sbjct: 64 gctctctgtgag 75
>RF00641;mir-154;AAYZ01254084.1/2089-2167 9978:Ochotona princeps
(American pika)
Length = 79
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 7 agcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaagctctc 66
|||||||||||||| ||||||||| || ||||||| || | |||||||||||||||||||
Sbjct: 10 agcgaggttgccctgtgtatattccgtgtattgacctgcagtatacaagggcaagctctc 69
Query: 67 tgtgag 72
||||||
Sbjct: 70 tgtgag 75
>RF00641;mir-154;AADB02234051.1/94-172 9606:Homo sapiens (human)
Length = 79
Score = 77.8 bits (39), Expect = 2e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 32 gtttattgacatggaatatacaagggcaagctctctgtgagta 74
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 35 gtttattgacgtggaatatacaagggcaagctctctgtgagta 77
