miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41844_bdi-MIR5175a:mirbase
Length = 137
Score = 79.8 bits (40), Expect = 4e-16
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 13 gtacttcctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaacagc 72
||||||| || |||||||||| ||| |||| ||||||| |||| ||||||||||||| |
Sbjct: 25 gtacttcttctgttcctaaattcttaccgctgttttagttcaaatttgtactaaaacaac 84
Query: 73 gacaagtatttaggaacggaggga 96
|| ||| |||||||||||||||||
Sbjct: 85 gataagaatttaggaacggaggga 108
Score = 61.9 bits (31), Expect = 9e-11
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 19 cctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaacagcgacaag 78
||||||||||||||| ||| ||| | ||||||| |||| ||| |||||||||||| |||
Sbjct: 106 cctccgttcctaaattcttatcgttgttttagtacaaatttgaactaaaacagcggtaag 47
Query: 79 tatttaggaac 89
||||||||||
Sbjct: 46 aatttaggaac 36
>41845_bdi-MIR5175b:mirbase
Length = 141
Score = 69.9 bits (35), Expect = 4e-13
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 14 tacttcctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaacagcg 73
||||||||| |||||||||| |||||| | ||||||| |||| ||||| |||| | ||
Sbjct: 30 tacttcctctgttcctaaattcttgtcattgttttagttcaaatttgtattaaagccacg 89
Query: 74 acaagtatttaggaacggagggagtat 100
||||| ||||||||| |||||||||||
Sbjct: 90 acaagaatttaggaatggagggagtat 116
>42669_tae-MIR1136:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 71 gcgacaagtatttaggaacggagggagta 99
|||||||||| || |||||||||||||||
Sbjct: 29 gcgacaagtaattcggaacggagggagta 1
>41899_hvu-MIR5049:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 74 acaagtatttaggaacggagggagt 98
|||||||||||||||| ||||||||
Sbjct: 25 acaagtatttaggaacagagggagt 1
