miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28700_hsa-mir-503:mirbase
Length = 71
Score = 131 bits (66), Expect = 7e-32
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggggtattgtttccg 60
Query: 61 ctgccagggt 70
||||||||||
Sbjct: 61 ctgccagggt 70
>31044_ppy-mir-503:mirbase
Length = 71
Score = 131 bits (66), Expect = 7e-32
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagttctgcagtgagcgattggtgctctggagtattgtttccg 60
Query: 61 ctgccagggt 70
||||||||||
Sbjct: 61 ctgccagggt 70
>27945_mml-mir-503:mirbase
Length = 71
Score = 115 bits (58), Expect = 4e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
|||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagttctgcagtgagtgatcagtactctggagtattgtttccg 60
Query: 61 ctgccagggt 70
||||||||||
Sbjct: 61 ctgccagggt 70
>27215_eca-mir-503:mirbase
Length = 71
Score = 97.6 bits (49), Expect = 9e-22
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | |
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgggcgatcggtgctctggagtattgttcctg 60
Query: 61 ctgcc 65
|||||
Sbjct: 61 ctgcc 65
>32943_rno-mir-503:mirbase
Length = 71
Score = 91.7 bits (46), Expect = 6e-20
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||||||| | | ||||| |||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgagtgtttggtgccctggagtattgtttccg 60
Query: 61 ctgccagggt 70
||||| ||||
Sbjct: 61 ctgcctgggt 70
>34115_ssc-mir-503:mirbase
Length = 109
Score = 89.7 bits (45), Expect = 2e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||||| ||||||||| |||||| |||||||||| |
Sbjct: 17 tgccctagcagcgggaacagtactgcagtgggcgatcggtactctggggtattgtttctg 76
Query: 61 ctgcc 65
|||||
Sbjct: 77 ctgcc 81
>32191_mmu-mir-503:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 1e-17
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||||||| | | ||||| ||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgagtgtttggtgccctggagtattgtttcca 60
Query: 61 ctgccagggt 70
||||| ||||
Sbjct: 61 ctgcctgggt 70
>26870_cfa-mir-503:mirbase
Length = 63
Score = 79.8 bits (40), Expect = 2e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 6 tagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccgctgcc 65
|||||||||||||||| |||||||| || ||||||| |||||||||||||||| ||||||
Sbjct: 1 tagcagcgggaacagtactgcagtgggcaatcggtgttctggagtattgtttctgctgcc 60
