miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00753;mir-503;AANU01115741.1/19317-19387 9544:Macaca mulatta
(rhesus monkey)
Length = 71
Score = 115 bits (58), Expect = 7e-26
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
|||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagttctgcagtgagtgatcagtactctggagtattgtttccg 60
Query: 61 ctgccagggt 70
||||||||||
Sbjct: 61 ctgccagggt 70
>RF00753;mir-503;AAEX02004019.1/2977-3047 9615:Canis lupus
familiaris (dog)
Length = 71
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||||| || ||||||| |||||||||||||||| |
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgggcaatcggtgttctggagtattgtttctg 60
Query: 61 ctgcc 65
|||||
Sbjct: 61 ctgcc 65
>RF00753;mir-503;AAKN02053360.1/159109-159039 10141:Cavia
porcellus (domestic guinea pig)
Length = 71
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||| |
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgagggatttgtgctctggagtgttgtttctg 60
Query: 61 ctgccaggg 69
|||||||||
Sbjct: 61 ctgccaggg 69
>RF00753;mir-503;BX649621.5/161937-161867 10090:Mus musculus
(house mouse)
Length = 71
Score = 83.8 bits (42), Expect = 3e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||||||| | | ||||| ||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgagtgtttggtgccctggagtattgtttcca 60
Query: 61 ctgccagggt 70
||||| ||||
Sbjct: 61 ctgcctgggt 70
>RF00753;mir-503;AANN01675780.1/1012-1082 9365:Erinaceus europaeus
(western European hedgehog)
Length = 71
Score = 75.8 bits (38), Expect = 6e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttc 58
||||||||||||||||||||| ||||||| ||||||| | ||||||||||| ||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtaagcgatcagggctctggagtaatgtttc 58
>RF00753;mir-503;AAGU02249221.1/641-573 9785:Loxodonta africana
(African savanna elephant)
Length = 69
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||| | ||| ||| |||||||||||||||| |||
Sbjct: 1 tgccctagcagcgggaacagtactgcagcgggcgctcg--gctctggagtattgttgccg 58
Query: 61 ctgcc 65
|||||
Sbjct: 59 ctgcc 63
>RF00753;mir-503;AAGV020284257.1/2168-2098 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 71
Score = 58.0 bits (29), Expect = 1e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||| | ||| |||||||||| |||||||| | |
Sbjct: 1 tgccctagcagcgggaacagtactgcagcaggtgattggtgctctggggtattgttcctg 60
Query: 61 ctgcc 65
|||||
Sbjct: 61 ctgcc 65
>RF00753;mir-503;AAGW01455164.1/90-19 9986:Oryctolagus cuniculus
(rabbit)
Length = 72
Score = 58.0 bits (29), Expect = 1e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagc 33
||||||||||||||||||||| |||||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgagc 33
>RF00753;mir-503;AAIY01107643.1/326-392 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 67
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtga 31
||||||||||||||||||||| |||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtga 31
>RF00753;mir-503;ABRO01386381.1/924-854 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 5 ctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccgctgc 64
||||||||||||||||| |||| || ||| ||| ||||| |||| |||| |||||||
Sbjct: 5 ctagcagcgggaacagtactgcggtcagctatccacactctgcagtaatgttgccgctgc 64
Query: 65 cagggt 70
||||||
Sbjct: 65 cagggt 70
>RF00753;mir-503;ABRQ01123748.1/1011-942 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagt 21
|||||||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagt 21
