miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 121 bits (61), Expect = 3e-27
Identities = 97/108 (89%), Gaps = 2/108 (1%)
Strand = Plus / Minus
Query: 10 atgtactccctctgtcccatattaagtgataaaatattacatgtatctagatgtttattt 69
|||||||||||| ||||||||||||||| |||||||||||||||||||||| || ||
Sbjct: 123 atgtactccctccgtcccatattaagtgtcgaaatattacatgtatctagatgctt--tt 66
Query: 70 tttgtatagatacattcatatttgggcaaatttgagtcacttaatatg 117
| |||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 65 taggtatagatacatccatatttgggcaaatttgagacacttaatatg 18
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 101 bits (51), Expect = 2e-21
Identities = 101/117 (86%), Gaps = 3/117 (2%)
Strand = Plus / Minus
Query: 15 ctccctctgtcccatattaagtgataaaatattacatgtatctagatgtttattttttgt 74
||||||| ||| |||||||||||| |||||||||||||||||||| | || ||| |
Sbjct: 118 ctccctccgtctcatattaagtgacgaaatattacatgtatctagacgctt---tttgat 62
Query: 75 atagatacattcatatttgggcaaatttgagtcacttaatatgagacggaaggagta 131
||||||||| |||||||||| | ||||||| ||||||||||||||||||| ||||||
Sbjct: 61 atagatacaatcatatttggacgaatttgaatcacttaatatgagacggagggagta 5
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 91.7 bits (46), Expect = 2e-18
Identities = 103/121 (85%), Gaps = 2/121 (1%)
Strand = Plus / Minus
Query: 12 gtactccctctgtcccatattaagtgataaaatattacatgtatctagatgtttattttt 71
|||||||||| |||||||||||| ||| ||||||||||||||||| | || |||
Sbjct: 122 gtactccctccgtcccatattaattgactttctattacatgtatctagacgctt--ttta 65
Query: 72 tgtatagatacattcatatttgggcaaatttgagtcacttaatatgagacggaaggagta 131
| |||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 64 agcatagatacatccatatttggacaaatttgagtcacttaatatgggacggagggagta 5
Query: 132 t 132
|
Sbjct: 4 t 4
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccatattaagtga 38
||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtcccatattaagtga 30
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 89.7 bits (45), Expect = 9e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 75 atagatacattcatatttgggcaaatttgagtcacttaatatgagacggaaggagta 131
|||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 65 atagatacatccatatttggacaaatttgagtcacttaatatgagacggagggagta 121
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 87.7 bits (44), Expect = 4e-17
Identities = 102/120 (85%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccatattaagtgataaaatattacatgtatctagatgtttatttttt 72
||||||||| |||||||||||||| |||||||||||||||||||| || | ||| |
Sbjct: 5 tactccctccgtcccatattaagtttcgaaatattacatgtatctagacgtat-tttagt 63
Query: 73 gtatagatacattcatatttgggcaaatttgagtcacttaatatgagacggaaggagtat 132
||||||||| | ||| ||| | |||||||||||||||||||||| |||||| |||||||
Sbjct: 64 atatagatacgtccatttttagacaaatttgagtcacttaatatgggacggagggagtat 123
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccatattaagtga 38
||||||||| ||||||||||||||||
Sbjct: 122 tactccctccgtcccatattaagtga 97
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 77.8 bits (39), Expect = 4e-14
Identities = 100/119 (84%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccatattaagtgataaaatattacatgtatctagatgtttatttttt 72
||||||||| |||||| ||||||||| ||||||||||||||||| |||| | | |
Sbjct: 5 tactccctccgtcccaaattaagtgactttctattacatgtatctagacgttt-tctagt 63
Query: 73 gtatagatacattcatatttgggcaaatttgagtcacttaatatgagacggaaggagta 131
||||||||| | ||||||| | |||||||||||||||||||||| |||||| ||||||
Sbjct: 64 atatagatacgtccatatttagacaaatttgagtcacttaatatgggacggagggagta 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccatattaagtga 38
||||||||| ||||||||||||||||
Sbjct: 122 tactccctccgtcccatattaagtga 97
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 65.9 bits (33), Expect = 1e-10
Identities = 72/84 (85%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 12 gtactccctctgtcccatattaagtgataaaatattacatgtatctagatgtttattttt 71
|||||||||| | ||||||||| || ||||||||||||||||||||| ||| ||||
Sbjct: 112 gtactccctccgatccatattaattgtcaaaatattacatgtatctagacgtt--tttta 55
Query: 72 tgtatagatacattcatatttggg 95
|| |||||||||| ||||||||||
Sbjct: 54 tgcatagatacatccatatttggg 31
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 60.0 bits (30), Expect = 8e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 79 atacattcatatttgggcaaatttgagtcacttaatatgagacgga 124
|||||| ||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 57 atacatccatatctggacaaatttgagtcacttaatatgggacgga 12
>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
distachyon
Length = 126
Score = 60.0 bits (30), Expect = 8e-09
Identities = 100/122 (81%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 10 atgtactccctctgtcccatattaagtgataaaatattacatgtatctagatgtttattt 69
|||||||||||| ||||||||||||||| |||||||| ||||||||| | | | |||
Sbjct: 2 atgtactccctccgtcccatattaagtgccgaaatattatatgtatctaaacatat-ttt 60
Query: 70 tttgtatagatacattcatatttgggcaaatttgagtcacttaatatgagacggaaggag 129
| ||||||||| | ||| ||| | ||||||| |||||||||||||| || ||| ||||
Sbjct: 61 agtatatagatacgtacatttttagacaaatttaagtcacttaatatgggatggagggag 120
Query: 130 ta 131
||
Sbjct: 121 ta 122
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 75 atagatacattcatatttgggcaaatttgagtcacttaatatgagacggaaggagta 131
|||||||||| |||||||| |||||||||||||||||||| |||||| ||||||
Sbjct: 61 atagatacatccatatttgattaaatttgagtcacttaatataggacggagggagta 5
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 41 aaatattacatgtatctagatgtttattttttgtatagatacattcatatttgggcaaat 100
|||||||||||||||||||| | || ||| | ||||||| || |||||||||||||||
Sbjct: 33 aaatattacatgtatctagacgctt--tttaagaatagatatatccatatttgggcaaat 90
Query: 101 ttgagtca 108
||||||||
Sbjct: 91 ttgagtca 98
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 75 atagatacattcatatttgggcaaatttgag 105
|||||||||| ||||||||||||||||||||
Sbjct: 65 atagatacatccatatttgggcaaatttgag 95
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 77/93 (82%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccatattaagtgataaaatattacatgtatctagatgtttatttttt 72
||||||||| | ||||||||| || ||||||||||||||||||| | | | ||||
Sbjct: 5 tactccctccgatccatattaattgtcaaaatattacatgtatctaaacgct--ttttag 62
Query: 73 gtatagatacattcatatttgggcaaatttgag 105
| |||||||||| |||||||||| |||||||||
Sbjct: 63 gcatagatacatccatatttgggaaaatttgag 95
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 76 tagatacattcatatttgggcaaatttgag 105
||||||||||| ||||||||||||||||||
Sbjct: 66 tagatacattcgtatttgggcaaatttgag 95
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 56/65 (86%), Gaps = 2/65 (3%)
Strand = Plus / Minus
Query: 41 aaatattacatgtatctagatgtttattttttgtatagatacattcatatttgggcaaat 100
|||||||||||||||||||| | || ||| | |||||||||| ||||| |||||||||
Sbjct: 93 aaatattacatgtatctagacgctt--tttaggcatagatacatccatatctgggcaaat 36
Query: 101 ttgag 105
|||||
Sbjct: 35 ttgag 31
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 50.1 bits (25), Expect = 8e-06
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 41 aaatattacatgtatctagatgtttattttttgtatagatacattcatatttgggcaaat 100
|||||||||||||||||||| || | |||| | |||||||||| ||| |||||| |||
Sbjct: 95 aaatattacatgtatctagacgtgttttttaggaatagatacatccatttttgggttaat 36
Query: 101 ttgag 105
|||||
Sbjct: 35 ttgag 31
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 75 atagatacattcatatttgggcaaatttgagtcacttaatatgagacggaaggagta 131
|||||| ||||| |||||||||||||||||| || ||||||| | |||| ||||||
Sbjct: 65 atagatgcattcgtatttgggcaaatttgagacaagtaatatgggtcggagggagta 121
>RF00906;MIR1122;EF059989.1/74343-74464 29664:Brachypodium
sylvaticum
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 18 cctctgtcccatattaagtgataaaatattacatgtatctagatgttt 65
|||| |||| |||||||||| |||| |||||||||||||||| ||||
Sbjct: 113 cctccgtcctatattaagtgtcaaaacattacatgtatctagacgttt 66
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgtactccctctgtcccatattaa 34
||||||||||||||||||||||||
Sbjct: 3 tgtactccctctgtcccatattaa 26
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 75 atagatacattcatatttgggcaaatttgag 105
||||||||||||||||||| ||||||||||
Sbjct: 65 atagatacattcatatttgatcaaatttgag 95
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 75 atagatacattcatatttgggcaaatttgag 105
|||||||||||| ||||||| ||||||||||
Sbjct: 65 atagatacattcgtatttggacaaatttgag 95
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 75 atagatacattcatatttgggcaaatttgag 105
|||||||||||||| ||||| ||||||||||
Sbjct: 65 atagatacattcatttttggtcaaatttgag 95
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 75 atagatacattcatatttgggcaaatttgag 105
|||||||||| ||| ||||||||||||||||
Sbjct: 61 atagatacatccatttttgggcaaatttgag 31
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 75 atagatacattcatatttgggcaaatttgag 105
|||||||||| ||| ||||||||||||||||
Sbjct: 65 atagatacatccatttttgggcaaatttgag 95
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 75 atagatacattcatatttgggcaaatttgag 105
||||||||||||| ||||||||||||||||
Sbjct: 65 atagatacattcaattttgggcaaatttgag 95
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 41 aaatattacatgtatctagatg 62
||||||||||||||||||||||
Sbjct: 93 aaatattacatgtatctagatg 72
>RF00906;MIR1122;AP008218.1/5877959-5877822 39947:Oryza sativa
Japonica Group
Length = 138
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatgtactccctctgtcccata 30
||||||||||||||||||||||
Sbjct: 1 tatgtactccctctgtcccata 22
