miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31124_ppy-mir-532:mirbase
Length = 91
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 61
Query: 61 cacacccaaggcttgcagaagagcgagcct 90
||||||||||||||||||||||||||||||
Sbjct: 62 cacacccaaggcttgcagaagagcgagcct 91
>31125_ppy-mir-532:mirbase
Length = 91
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 61
Query: 61 cacacccaaggcttgcagaagagcgagcct 90
||||||||||||||||||||||||||||||
Sbjct: 62 cacacccaaggcttgcagaagagcgagcct 91
>28785_hsa-mir-532:mirbase
Length = 91
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 61
Query: 61 cacacccaaggcttgcagaagagcgagcct 90
||||||||||||||||| || |||||||||
Sbjct: 62 cacacccaaggcttgcaaaaaagcgagcct 91
>28786_hsa-mir-532:mirbase
Length = 91
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 61
Query: 61 cacacccaaggcttgcagaagagcgagcct 90
||||||||||||||||| || |||||||||
Sbjct: 62 cacacccaaggcttgcaaaaaagcgagcct 91
>27988_mml-mir-532:mirbase
Length = 78
Score = 153 bits (77), Expect = 3e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 61
Query: 61 cacacccaaggcttgca 77
|||||||||||||||||
Sbjct: 62 cacacccaaggcttgca 78
>27987_mml-mir-532:mirbase
Length = 78
Score = 153 bits (77), Expect = 3e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 61
Query: 61 cacacccaaggcttgca 77
|||||||||||||||||
Sbjct: 62 cacacccaaggcttgca 78
>33410_bta-mir-532:mirbase
Length = 86
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacttgctttctctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
Query: 61 cacacccaaggcttgcagaagagc 84
|||||||||||||||||| |||||
Sbjct: 61 cacacccaaggcttgcaggagagc 84
>27223_eca-mir-532:mirbase
Length = 90
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 4 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ttgctttctctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
Query: 64 acccaaggcttgcag 78
|||||||||||||||
Sbjct: 64 acccaaggcttgcag 78
>27224_eca-mir-532:mirbase
Length = 90
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 4 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ttgctttctctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
Query: 64 acccaaggcttgcag 78
|||||||||||||||
Sbjct: 64 acccaaggcttgcag 78
>32199_mmu-mir-532:mirbase
Length = 96
Score = 133 bits (67), Expect = 2e-32
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 4 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6 ttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcccac 65
Query: 64 acccaaggcttgcagaagagcgagcct 90
||||||||||||||| ||||| |||||
Sbjct: 66 acccaaggcttgcaggagagcaagcct 92
>32200_mmu-mir-532:mirbase
Length = 96
Score = 133 bits (67), Expect = 2e-32
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 4 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6 ttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcccac 65
Query: 64 acccaaggcttgcagaagagcgagcct 90
||||||||||||||| ||||| |||||
Sbjct: 66 acccaaggcttgcaggagagcaagcct 92
>32947_rno-mir-532:mirbase
Length = 79
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 12 tctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccacacccaagg 71
|||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 4 tctcttccatgccttgagtgtaggactgttgacatcttaattaccctcccacacccaagg 63
Query: 72 cttgcagaagagc 84
||||||| |||||
Sbjct: 64 cttgcaggagagc 76
>32948_rno-mir-532:mirbase
Length = 79
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 12 tctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccacacccaagg 71
|||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 4 tctcttccatgccttgagtgtaggactgttgacatcttaattaccctcccacacccaagg 63
Query: 72 cttgcagaagagc 84
||||||| |||||
Sbjct: 64 cttgcaggagagc 76
>26874_cfa-mir-532:mirbase
Length = 59
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 19 catgccttgagtgtaggaccgttggcatcttaattaccctcccacacccaaggcttgca 77
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 catgccttgagtgtaggaccgttggtatcttaattaccctcccacacccaaggcttgca 59
>34118_ssc-mir-532:mirbase
Length = 80
Score = 109 bits (55), Expect = 3e-25
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 4 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
|||||||||||| | |||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 1 ttgctttctctcttacatgccttgagtgtaggaccgttggcatctgaa-taccctcccac 59
Query: 64 acccaaggcttgcag 78
|||||||||||||||
Sbjct: 60 acccaaggcttgcag 74
>34119_ssc-mir-532:mirbase
Length = 80
Score = 109 bits (55), Expect = 3e-25
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 4 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
|||||||||||| | |||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 1 ttgctttctctcttacatgccttgagtgtaggaccgttggcatctgaa-taccctcccac 59
Query: 64 acccaaggcttgcag 78
|||||||||||||||
Sbjct: 60 acccaaggcttgcag 74
