miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01897;mir-188;ABRO01329850.1/1587-1692 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 106
Score = 143 bits (72), Expect = 4e-34
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 3 cttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctccca 62
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 10 cttgctttctctccttcatgccttgagtgtaggaccgttagcatcttaattaccctccca 69
Query: 63 cacccaaggcttgcagaagagcgagcct 90
|||||||||||||||| ||||| |||||
Sbjct: 70 cacccaaggcttgcaggagagcaagcct 97
>RF01897;mir-188;AAGW01126437.1/520-625 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 137 bits (69), Expect = 3e-32
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 2 acttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctccc 61
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 9 acttgctttctctcttccatgccttgagtgtaggactgttggaatcttaattaccctccc 68
Query: 62 acacccaaggcttgcagaagagcgagcct 90
||||||||||||||||| |||| ||||||
Sbjct: 69 acacccaaggcttgcaggagagtgagcct 97
>RF01897;mir-188;AAHY01206841.1/3828-3933 10090:Mus musculus
(house mouse)
Length = 106
Score = 133 bits (67), Expect = 4e-31
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 4 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 11 ttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcccac 70
Query: 64 acccaaggcttgcagaagagcgagcct 90
||||||||||||||| ||||| |||||
Sbjct: 71 acccaaggcttgcaggagagcaagcct 97
>RF01897;mir-188;AAEX02025396.1/219014-218909 9615:Canis lupus
familiaris (dog)
Length = 106
Score = 131 bits (66), Expect = 2e-30
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 1 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8 gacttgctttctctcttacatgccttgagtgtaggaccgttggtatcttaattaccctcc 67
Query: 61 cacacccaaggcttgcag 78
||||||||||||||||||
Sbjct: 68 cacacccaaggcttgcag 85
>RF01897;mir-188;AAGU02358860.1/2697-2802 9785:Loxodonta africana
(African savanna elephant)
Length = 106
Score = 107 bits (54), Expect = 2e-23
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 1 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
|||||| ||| |||| | ||||||||||||||||||||||||| || ||||||| |||||
Sbjct: 8 gacttgttttttctcttacatgccttgagtgtaggaccgttggtatattaattatcctcc 67
Query: 61 cacacccaaggcttgcagaagagcgagcct 90
|||||||||||||||||| |||| ||||||
Sbjct: 68 cacacccaaggcttgcaggagagagagcct 97
>RF01897;mir-188;AANN01828942.1/2423-2529 9365:Erinaceus europaeus
(western European hedgehog)
Length = 107
Score = 105 bits (53), Expect = 9e-23
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 2 acttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctccc 61
||||||||| |||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9 acttgctttgtctcttgcatgccttgagtgtaggaccgttggcatctctgttaccctccc 68
Query: 62 acacccaaggcttgcag 78
|||||||||||||||||
Sbjct: 69 acacccaaggcttgcag 85
>RF01897;mir-188;ABRQ01388379.1/2083-2188 9813:Procavia capensis
(cape rock hyrax)
Length = 106
Score = 77.8 bits (39), Expect = 2e-14
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 4 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
||||||| |||| | |||||||||||||||||| ||| |||| ||| ||| ||||||||
Sbjct: 11 ttgctttttctcttacatgccttgagtgtaggaatgttagcatattagttatcctcccac 70
Query: 64 acccaaggcttgcagaagagcgagcct 90
|||||||| |||||| |||| ||||||
Sbjct: 71 acccaaggtttgcaggagagagagcct 97
