miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27993_mml-mir-543:mirbase
Length = 80
Score = 103 bits (52), Expect = 2e-23
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1 acttaatgagaagttgcccgtgnnnnnnncgctttatttgtgacgaaacattcgcggtgc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4 acttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgc 63
Query: 61 acttcttcttcagtatc 77
||||||| |||||||||
Sbjct: 64 acttctttttcagtatc 80
>28791_hsa-mir-543:mirbase
Length = 78
Score = 103 bits (52), Expect = 2e-23
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1 acttaatgagaagttgcccgtgnnnnnnncgctttatttgtgacgaaacattcgcggtgc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2 acttaatgagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgc 61
Query: 61 acttcttcttcagtatc 77
||||||| |||||||||
Sbjct: 62 acttctttttcagtatc 78
>31130_ppy-mir-543:mirbase
Length = 78
Score = 103 bits (52), Expect = 2e-23
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1 acttaatgagaagttgcccgtgnnnnnnncgctttatttgtgacgaaacattcgcggtgc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2 acttaatgagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgc 61
Query: 61 acttcttcttcagtatc 77
||||||| |||||||||
Sbjct: 62 acttctttttcagtatc 78
>27229_eca-mir-543:mirbase
Length = 72
Score = 85.7 bits (43), Expect = 4e-18
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 2 cttaatgagaagttgcccgtgnnnnnnncgctttatttgtgacgaaacattcgcggtgca 61
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 cttaaggagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgca 60
Query: 62 cttcttcttcag 73
|||||| |||||
Sbjct: 61 cttctttttcag 72
>33414_bta-mir-543:mirbase
Length = 80
Score = 85.7 bits (43), Expect = 4e-18
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 2 cttaatgagaagttgcccgtgnnnnnnncgctttatttgtgacgaaacattcgcggtgca 61
||||| ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 5 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 64
Query: 62 cttcttcttcagtatc 77
|||||| |||||||||
Sbjct: 65 cttctttttcagtatc 80
>33868_oar-mir-543:mirbase
Length = 123
Score = 85.7 bits (43), Expect = 4e-18
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 2 cttaatgagaagttgcccgtgnnnnnnncgctttatttgtgacgaaacattcgcggtgca 61
||||| ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 33 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 92
Query: 62 cttcttcttcagtatc 77
|||||| |||||||||
Sbjct: 93 cttctttttcagtatc 108
>33869_oar-mir-543:mirbase
Length = 123
Score = 85.7 bits (43), Expect = 4e-18
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 2 cttaatgagaagttgcccgtgnnnnnnncgctttatttgtgacgaaacattcgcggtgca 61
||||| ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 33 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 92
Query: 62 cttcttcttcagtatc 77
|||||| |||||||||
Sbjct: 93 cttctttttcagtatc 108
>32208_mmu-mir-543:mirbase
Length = 76
Score = 77.8 bits (39), Expect = 1e-15
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 2 cttaatgagaagttgcccgtgnnnnnnncgctttatttgtgacgaaacattcgcggtgca 61
||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 3 cttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgca 62
Query: 62 cttcttcttcag 73
|||||| |||||
Sbjct: 63 cttctttttcag 74
>32954_rno-mir-543:mirbase
Length = 80
Score = 77.8 bits (39), Expect = 1e-15
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 2 cttaatgagaagttgcccgtgnnnnnnncgctttatttgtgacgaaacattcgcggtgca 61
||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 5 cttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgca 64
Query: 62 cttcttcttcag 73
|||||| |||||
Sbjct: 65 cttctttttcag 76
>26877_cfa-mir-543:mirbase
Length = 58
Score = 75.8 bits (38), Expect = 4e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 30 cgctttatttgtgacgaaacattcgcggtgcacttctt 67
||||||||||||||||||||||||||||||||||||||
Sbjct: 21 cgctttatttgtgacgaaacattcgcggtgcacttctt 58
>27935_mml-mir-495:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 30 cgctttatttgtgacgaaacattcgcggtgcacttcttcttcagtatc 77
|||||||| |||||||||||| | |||||||||||| ||| |||||
Sbjct: 34 cgctttatatgtgacgaaacaaacatggtgcacttctttttcggtatc 81
>28686_hsa-mir-495:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 30 cgctttatttgtgacgaaacattcgcggtgcacttcttcttcagtatc 77
|||||||| |||||||||||| | |||||||||||| ||| |||||
Sbjct: 34 cgctttatatgtgacgaaacaaacatggtgcacttctttttcggtatc 81
>30398_ptr-mir-495:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 30 cgctttatttgtgacgaaacattcgcggtgcacttcttcttcagtatc 77
|||||||| |||||||||||| | |||||||||||| ||| |||||
Sbjct: 33 cgctttatatgtgacgaaacaaacatggtgcacttctttttcggtatc 80
>31034_ppy-mir-495:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 30 cgctttatttgtgacgaaacattcgcggtgcacttcttcttcagtatc 77
|||||||| |||||||||||| | |||||||||||| ||| |||||
Sbjct: 31 cgctttatatgtgacgaaacaaacatggtgcacttctttttcggtatc 78
>32184_mmu-mir-495:mirbase
Length = 63
Score = 38.2 bits (19), Expect = 9e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 33 tttatttgtgacgaaacattcgcggtgcacttctt 67
|||||||||||||||||| | ||||||||||||
Sbjct: 29 tttatttgtgacgaaacaaacatggtgcacttctt 63
>32937_rno-mir-495:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 9e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 33 tttatttgtgacgaaacattcgcggtgcacttctt 67
|||||||||||||||||| | ||||||||||||
Sbjct: 36 tttatttgtgacgaaacaaacatggtgcacttctt 70
