miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28816_hsa-mir-548b:mirbase
Length = 97
Score = 174 bits (88), Expect = 7e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 1 cagactatatatttaggttggcgcaaaagtaattgcagttttggcctttattttcaatgg 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 cagactatatatttaggttggcgcaaaagtaattgtggttttggcctttattttcaatgg 60
Query: 61 caagaacctcagttgcttttgtgccaacctaatact 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagaacctcagttgcttttgtgccaacctaatact 96
>28817_hsa-mir-548b:mirbase
Length = 97
Score = 174 bits (88), Expect = 7e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 1 cagactatatatttaggttggcgcaaaagtaattgcagttttggcctttattttcaatgg 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 cagactatatatttaggttggcgcaaaagtaattgtggttttggcctttattttcaatgg 60
Query: 61 caagaacctcagttgcttttgtgccaacctaatact 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagaacctcagttgcttttgtgccaacctaatact 96
>27997_mml-mir-548b:mirbase
Length = 97
Score = 119 bits (60), Expect = 4e-28
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 5 ctatatatttaggttggcgcaaaagtaattgcagttttggcctttattttcaatggcaag 64
|||| |||||||||||| ||||||||||||| | || |||||||||||||||||||||
Sbjct: 5 ctatgtatttaggttggtgcaaaagtaattggggcttgggcctttattttcaatggcaaa 64
Query: 65 aacctcagttgcttttgtgccaacctaatact 96
||||||| ||||||||||||||||||||||||
Sbjct: 65 aacctcaattgcttttgtgccaacctaatact 96
>28855_hsa-mir-548x-2:mirbase
Length = 100
Score = 67.9 bits (34), Expect = 1e-12
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgcagttttggcctttattttcaatggcaagaacctcag 72
|||||||||| | ||||||||||||||||| || ||| ||| |||||||| | || ||
Sbjct: 90 ttaggttggcacgaaagtaattgcagtttttaccattacttttaatggcaaaagccacaa 31
Query: 73 ttgcttttgtgccaacctaata 94
|| |||||||||||||||||||
Sbjct: 30 ttacttttgtgccaacctaata 9
>28833_hsa-mir-548h-3:mirbase
Length = 118
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 12 tttaggttggcgcaaaagtaattgcagttttggcctttattttcaatggcaagaacctca 71
|||||||||| |||||||||||||||||||| || ||| |||||||| ||| |||| |
Sbjct: 97 tttaggttggtgcaaaagtaattgcagtttttgctattactttcaatgacaaaaaccgcg 38
Query: 72 gttgcttttgtgccaacctaatac 95
|| |||||| ||||||||||||
Sbjct: 37 attacttttgcaccaacctaatac 14
>28818_hsa-mir-548c:mirbase
Length = 97
Score = 56.0 bits (28), Expect = 5e-09
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgcagttttggcctttattttcaatggcaagaacctcag 72
||||||||| |||||||||||||| ||||| ||| ||| ||||| | |||| || ||||
Sbjct: 13 ttaggttggtgcaaaagtaattgcggtttttgccattactttcagtagcaaaaatctcaa 72
Query: 73 ttgcttttgtgccaacctaatact 96
|| |||||| ||||| |||||||
Sbjct: 73 ttacttttgcaccaacttaatact 96
>28819_hsa-mir-548c:mirbase
Length = 97
Score = 56.0 bits (28), Expect = 5e-09
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgcagttttggcctttattttcaatggcaagaacctcag 72
||||||||| |||||||||||||| ||||| ||| ||| ||||| | |||| || ||||
Sbjct: 13 ttaggttggtgcaaaagtaattgcggtttttgccattactttcagtagcaaaaatctcaa 72
Query: 73 ttgcttttgtgccaacctaatact 96
|| |||||| ||||| |||||||
Sbjct: 73 ttacttttgcaccaacttaatact 96
>28857_hsa-mir-548z:mirbase
Length = 97
Score = 56.0 bits (28), Expect = 5e-09
Identities = 70/84 (83%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgcagttttggcctttattttcaatggcaagaacctcag 72
||||||||| |||||||||||||| ||||| ||| ||| ||||| | |||| || ||||
Sbjct: 85 ttaggttggtgcaaaagtaattgcggtttttgccattactttcagtagcaaaaatctcaa 26
Query: 73 ttgcttttgtgccaacctaatact 96
|| |||||| ||||| |||||||
Sbjct: 25 ttacttttgcaccaacttaatact 2
>30473_ptr-mir-548c:mirbase
Length = 96
Score = 56.0 bits (28), Expect = 5e-09
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgcagttttggcctttattttcaatggcaagaacctcag 72
||||||||| |||||||||||||| ||||| ||| ||| ||||| | |||| || ||||
Sbjct: 13 ttaggttggtgcaaaagtaattgcggtttttgccattactttcagtagcaaaaatctcaa 72
Query: 73 ttgcttttgtgccaacctaatact 96
|| |||||| ||||| |||||||
Sbjct: 73 ttacttttgcaccaacttaatact 96
>28851_hsa-mir-548u:mirbase
Length = 81
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgcagt 39
|||||||||||||||||||||||||||
Sbjct: 80 ttaggttggcgcaaaagtaattgcagt 54
>28811_hsa-mir-548aj-2:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgcagtttt 42
||||||||| ||||||||||||||||||||
Sbjct: 7 ttaggttggtgcaaaagtaattgcagtttt 36
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgcagtttt 42
||||||||| | ||||||||||||||||||
Sbjct: 86 ttaggttggtgtaaaagtaattgcagtttt 57
>28832_hsa-mir-548h-2:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgcagttttggcctttattttcaatggcaagaacctcag 72
||||||||| ||||||||||| || ||||| | | ||| |||||||||||| ||| ||
Sbjct: 4 ttaggttggtgcaaaagtaatcgcggtttttgtcattactttcaatggcaaacaccacaa 63
Query: 73 ttgcttttgtgccaacctaata 94
|| |||||| |||||||||||
Sbjct: 64 ttacttttgcaccaacctaata 85
>28800_hsa-mir-548aa-2:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgcagttttggcctttattttcaatggcaagaacctcag 72
||||||||| ||||||| || || ||||| ||| ||| |||||||||||| |||| ||
Sbjct: 6 ttaggttggtgcaaaagaaactgtggtttttgccattactttcaatggcaaaaaccacaa 65
Query: 73 ttgcttttgtgccaacctaa 92
|| |||||| |||||||||
Sbjct: 66 ttacttttgcaccaacctaa 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 atttaggttggcgcaaaagtaattg 35
||||||||||| |||||||||||||
Sbjct: 87 atttaggttggtgcaaaagtaattg 63
>28822_hsa-mir-548d-2:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgcagttttggcctttattttcaatggcaagaacctcag 72
||||||||| ||||||| || || ||||| ||| ||| |||||||||||| |||| ||
Sbjct: 92 ttaggttggtgcaaaagaaactgtggtttttgccattactttcaatggcaaaaaccacaa 33
Query: 73 ttgcttttgtgccaacctaa 92
|| |||||| |||||||||
Sbjct: 32 ttacttttgcaccaacctaa 13
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 atttaggttggcgcaaaagtaattg 35
||||||||||| |||||||||||||
Sbjct: 11 atttaggttggtgcaaaagtaattg 35
>28823_hsa-mir-548d-2:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgcagttttggcctttattttcaatggcaagaacctcag 72
||||||||| ||||||| || || ||||| ||| ||| |||||||||||| |||| ||
Sbjct: 92 ttaggttggtgcaaaagaaactgtggtttttgccattactttcaatggcaaaaaccacaa 33
Query: 73 ttgcttttgtgccaacctaa 92
|| |||||| |||||||||
Sbjct: 32 ttacttttgcaccaacctaa 13
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 atttaggttggcgcaaaagtaattg 35
||||||||||| |||||||||||||
Sbjct: 11 atttaggttggtgcaaaagtaattg 35
>28019_mml-mir-570:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgcagttttggcctttattttcaatggcaa 63
||||||||| ||||| |||||||||||||| ||| ||| ||| || |||||
Sbjct: 3 ttaggttggtgcaaacgtaattgcagtttttgccattacttttaaaggcaa 53
>28002_mml-mir-548f:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 atttaggttggcgcaaaagtaattgc 36
||||||||||| ||||||||||||||
Sbjct: 1 atttaggttggtgcaaaagtaattgc 26
>28809_hsa-mir-548ai:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgcagtttt 42
||||||||| ||||| ||||||||||||||
Sbjct: 4 ttaggttggtgcaaaggtaattgcagtttt 33
>28826_hsa-mir-548f-2:mirbase
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgcagtttt 42
||||||||| |||||||||||| |||||||
Sbjct: 89 ttaggttggtgcaaaagtaattacagtttt 60
>28827_hsa-mir-548f-3:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgcagtttt 42
||||||||| |||||||||||| |||||||
Sbjct: 84 ttaggttggtgcaaaagtaattacagtttt 55
>28834_hsa-mir-548h-4:mirbase
Length = 111
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgcagtttt 42
||||||||| |||||||||||||| |||||
Sbjct: 102 ttaggttggtgcaaaagtaattgcggtttt 73
>30474_ptr-mir-548f-1:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgcagtttt 42
||||||||| |||||||||||| |||||||
Sbjct: 78 ttaggttggtgcaaaagtaattacagtttt 49
>30475_ptr-mir-548f-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgcagtttt 42
||||||||| |||||||||||| |||||||
Sbjct: 84 ttaggttggtgcaaaagtaattacagtttt 55
>28001_mml-mir-548e:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 14 taggttggcgcaaaagtaattgc-agttttggcctttattttcaatggcaagaacctcag 72
|||||||| |||||||||||||| |||||| || ||| |||||||||||| | | |||
Sbjct: 14 taggttggtgcaaaagtaattgcgagtttt-accattactttcaatggcaaaaccggcag 72
Query: 73 ttgcttttgtgccaacctaatact 96
|| |||||| ||||| |||||||
Sbjct: 73 ttacttttgcaccaacgtaatact 96
>28828_hsa-mir-548f-4:mirbase
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Minus
Query: 24 caaaagtaattgcagttttggcctttattttcaatggcaagaacctcagttgcttttgtg 83
||||||||||| ||||||| | | ||| ||| |||||||| |||| | || ||||||
Sbjct: 82 caaaagtaattacagtttttgtcattacttttaatggcaaaaaccactattacttttgca 23
Query: 84 ccaacctaatac 95
||||||||||||
Sbjct: 22 ccaacctaatac 11
>28830_hsa-mir-548g:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 gcaaaagtaattgcagtttt 42
||||||||||||||||||||
Sbjct: 16 gcaaaagtaattgcagtttt 35
>28836_hsa-mir-548i-1:mirbase
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgc 36
||||||||| ||||||||||||||
Sbjct: 27 ttaggttggtgcaaaagtaattgc 50
>28844_hsa-mir-548n:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgc 36
||||||||| ||||||||||||||
Sbjct: 75 ttaggttggtgcaaaagtaattgc 52
>28845_hsa-mir-548o:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 17 gttggcgcaaaagtaattgcagttttgg 44
||||| |||||||||| |||||||||||
Sbjct: 114 gttggtgcaaaagtaactgcagttttgg 87
>28846_hsa-mir-548o-2:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 23 gcaaaagtaattgcagttttggcc 46
|||||||||| |||||||||||||
Sbjct: 66 gcaaaagtaactgcagttttggcc 43
>28849_hsa-mir-548s:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 23 gcaaaagtaattgcagttttggcctttatttt 54
|||||| ||||||||||||| ||| |||||||
Sbjct: 6 gcaaaaataattgcagtttttgccattatttt 37
>28854_hsa-mir-548x:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 gcaaaagtaattgcagtttt 42
||||||||||||||||||||
Sbjct: 9 gcaaaagtaattgcagtttt 28
>30477_ptr-mir-548i-1:mirbase
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgc 36
||||||||| ||||||||||||||
Sbjct: 27 ttaggttggtgcaaaagtaattgc 50
>30478_ptr-mir-548i-2:mirbase
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgc 36
||||||||| ||||||||||||||
Sbjct: 27 ttaggttggtgcaaaagtaattgc 50
>30479_ptr-mir-548i-3:mirbase
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgc 36
||||||||| ||||||||||||||
Sbjct: 26 ttaggttggtgcaaaagtaattgc 49
>30480_ptr-mir-548i-4:mirbase
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgc 36
||||||||| ||||||||||||||
Sbjct: 27 ttaggttggtgcaaaagtaattgc 50
>30481_ptr-mir-548i-5:mirbase
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgc 36
||||||||| ||||||||||||||
Sbjct: 26 ttaggttggtgcaaaagtaattgc 49
>30482_ptr-mir-548i-6:mirbase
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgc 36
||||||||| ||||||||||||||
Sbjct: 26 ttaggttggtgcaaaagtaattgc 49
