miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31133_ppy-mir-549:mirbase
Length = 96
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 agacatgcaactcaagaatatattgagagctcatccatagttgtcactgtctcagatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agacatgcaactcaagaatatattgagagctcatccatagttgtcactgtctcagatcag 60
Query: 61 tgacaactatggatgagctcttaatatatcccagg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgacaactatggatgagctcttaatatatcccagg 95
Score = 89.7 bits (45), Expect = 3e-19
Identities = 68/73 (93%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 18 atatattgagagctcatccatagttgtcactg-tctcagatcagtgacaactatggatga 76
||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||
Sbjct: 89 atatattaagagctcatccatagttgtcactgatctgaga-cagtgacaactatggatga 31
Query: 77 gctcttaatatat 89
||||| |||||||
Sbjct: 30 gctctcaatatat 18
>28858_hsa-mir-549:mirbase
Length = 96
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 1 agacatgcaactcaagaatatattgagagctcatccatagttgtcactgtctcagatcag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 agacatgcaactcaagaatatattgagagctcatccatagttgtcactgtctcaaatcag 60
Query: 61 tgacaactatggatgagctcttaatatatcccagg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgacaactatggatgagctcttaatatatcccagg 95
Score = 81.8 bits (41), Expect = 8e-17
Identities = 67/73 (91%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 18 atatattgagagctcatccatagttgtcactg-tctcagatcagtgacaactatggatga 76
||||||| |||||||||||||||||||||||| | | ||| |||||||||||||||||||
Sbjct: 89 atatattaagagctcatccatagttgtcactgatttgaga-cagtgacaactatggatga 31
Query: 77 gctcttaatatat 89
||||| |||||||
Sbjct: 30 gctctcaatatat 18
>28003_mml-mir-549:mirbase
Length = 95
Score = 165 bits (83), Expect = 7e-42
Identities = 93/95 (97%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 1 agacatgcaactcaagaatatattgagagctcatccatagttgtcactgtctcagatcag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agacatgcaactcaagaatatattgagagctcatccatagttgtcactgtctcagatca- 59
Query: 61 tgacaactatggatgagctcttaatatatcccagg 95
|||||| ||||||||||||||||||||||||||||
Sbjct: 60 tgacaattatggatgagctcttaatatatcccagg 94
Score = 71.9 bits (36), Expect = 8e-14
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 18 atatattgagagctcatccatagttgtcactgtctcagatcagtgacaactatggatgag 77
||||||| |||||||||||||| |||||| ||| ||| ||||||||||||||||||||
Sbjct: 88 atatattaagagctcatccataattgtcatgatctgaga-cagtgacaactatggatgag 30
Query: 78 ctcttaatatat 89
|||| |||||||
Sbjct: 29 ctctcaatatat 18
