miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28859_hsa-mir-550a-1:mirbase
Length = 97
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tgatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatag 60
Query: 61 tgtcttactccctcaggcacatctccaacaagtctc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcttactccctcaggcacatctccaacaagtctc 96
>28861_hsa-mir-550b-1:mirbase
Length = 97
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 1 tgatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 tgatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatag 38
Query: 61 tgtcttactccctcaggcacatctccaacaagtctc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 37 tgtcttactccctcaggcacatctccaacaagtctc 2
>30490_ptr-mir-550-2:mirbase
Length = 96
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 2 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 60
Query: 62 gtcttactccctcaggcacatctccaacaagtctc 96
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcttactccctcaggcacatctccaacaagtctc 95
>30491_ptr-mir-550-3:mirbase
Length = 96
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 2 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 60
Query: 62 gtcttactccctcaggcacatctccaacaagtctc 96
|||||||||||||||||||||||||||| ||||||
Sbjct: 61 gtcttactccctcaggcacatctccaacgagtctc 95
>28004_mml-mir-550:mirbase
Length = 93
Score = 168 bits (85), Expect = 5e-43
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 1 tgatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatag 60
Query: 61 tgtcttactccctcaggcacatctccaacaagt 93
|||| |||||||||||||||||||||| |||||
Sbjct: 61 tgtcctactccctcaggcacatctccagcaagt 93
>28860_hsa-mir-550a-2:mirbase
Length = 97
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 1 tgatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 tgatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtcagatag 60
Query: 61 tgtcttactccctcaggcacatctccaacaagtctc 96
||||||||||||||||||||||||||| | ||||||
Sbjct: 61 tgtcttactccctcaggcacatctccagcgagtctc 96
>28862_hsa-mir-550b-2:mirbase
Length = 97
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Minus
Query: 1 tgatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 97 tgatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtcagatag 38
Query: 61 tgtcttactccctcaggcacatctccaacaagtctc 96
||||||||||||||||||||||||||| | ||||||
Sbjct: 37 tgtcttactccctcaggcacatctccagcgagtctc 2
