miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28859_hsa-mir-550a-1:mirbase
Length = 97
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 61
Query: 61 gtcttactccctcaggcacatctccaacaagtctct 96
||||||||||||||||||||||||||||||||||||
Sbjct: 62 gtcttactccctcaggcacatctccaacaagtctct 97
>28861_hsa-mir-550b-1:mirbase
Length = 97
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 1 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 37
Query: 61 gtcttactccctcaggcacatctccaacaagtctct 96
||||||||||||||||||||||||||||||||||||
Sbjct: 36 gtcttactccctcaggcacatctccaacaagtctct 1
>30489_ptr-mir-550-1:mirbase
Length = 96
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 61
Query: 61 gtcttactccctcaggcacatctccaacaagtctc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 62 gtcttactccctcaggcacatctccaacaagtctc 96
>30491_ptr-mir-550-3:mirbase
Length = 96
Score = 182 bits (92), Expect = 3e-47
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 1 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 60
Query: 61 gtcttactccctcaggcacatctccaacaagtctct 96
|||||||||||||||||||||||||||| |||||||
Sbjct: 61 gtcttactccctcaggcacatctccaacgagtctct 96
>28004_mml-mir-550:mirbase
Length = 93
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 61
Query: 61 gtcttactccctcaggcacatctccaacaagt 92
||| |||||||||||||||||||||| |||||
Sbjct: 62 gtcctactccctcaggcacatctccagcaagt 93
>28860_hsa-mir-550a-2:mirbase
Length = 97
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 1 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtcagatagt 61
Query: 61 gtcttactccctcaggcacatctccaacaagtctct 96
|||||||||||||||||||||||||| | |||||||
Sbjct: 62 gtcttactccctcaggcacatctccagcgagtctct 97
>28862_hsa-mir-550b-2:mirbase
Length = 97
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Minus
Query: 1 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtaagatagt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 96 gatgctttgctggctggtgcagtgcctgagggagtaagagccctgttgttgtcagatagt 37
Query: 61 gtcttactccctcaggcacatctccaacaagtctct 96
|||||||||||||||||||||||||| | |||||||
Sbjct: 36 gtcttactccctcaggcacatctccagcgagtctct 1
