miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31134_ppy-mir-551a:mirbase
Length = 96
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 ggggactgccgggtgaccctggaaatccagagtgggtggggcctgtctgaccgtttctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggggactgccgggtgaccctggaaatccagagtgggtggggcctgtctgaccgtttctag 60
Query: 61 gcgacccactcttggtttccagggttgccctggaa 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgacccactcttggtttccagggttgccctggaa 95
>28005_mml-mir-551a:mirbase
Length = 96
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 1 ggggactgccgggtgaccctggaaatccagagtgggtggggcctgtctgaccgtttctag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 ggggactgccgggtgaccctggaaatccagagtgggtggggcctgtctgaccatttctag 60
Query: 61 gcgacccactcttggtttccagggttgccctggaa 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgacccactcttggtttccagggttgccctggaa 95
>28863_hsa-mir-551a:mirbase
Length = 96
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 1 ggggactgccgggtgaccctggaaatccagagtgggtggggcctgtctgaccgtttctag 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ggggactgccgggtgaccctggaaatccagagtgggtggggccagtctgaccgtttctag 60
Query: 61 gcgacccactcttggtttccagggttgccctggaa 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgacccactcttggtttccagggttgccctggaa 95
>26880_cfa-mir-551a:mirbase
Length = 94
Score = 131 bits (66), Expect = 1e-31
Identities = 87/94 (92%)
Strand = Plus / Plus
Query: 1 ggggactgccgggtgaccctggaaatccagagtgggtggggcctgtctgaccgtttctag 60
|||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct: 1 ggggactgccaggtgaccctggaaatccagagtgggtaaggcctgtctgattgtgtctag 60
Query: 61 gcgacccactcttggtttccagggttgccctgga 94
||||||||||||||||||||| ||||||||||||
Sbjct: 61 gcgacccactcttggtttccatggttgccctgga 94
>27233_eca-mir-551a:mirbase
Length = 62
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 20 tggaaatccagagtgggtggggcctgtctgaccgtttctaggcgacccactcttggtttc 79
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tggaaatccagagtgggtgaggcctgtctgaccatttctaggcgacccactcttggtttc 60
Query: 80 ca 81
||
Sbjct: 61 ca 62
>27457_mdo-mir-551a:mirbase
Length = 83
Score = 91.7 bits (46), Expect = 8e-20
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 14 tgaccctggaaatccagagtgggtggggcctgtctgaccgtttctaggcgacccactctt 73
|||||||||||||||||| |||||| |||||| ||| |||||||||||||||| ||||
Sbjct: 1 tgaccctggaaatccagaaggggtggagcctgttggacagtttctaggcgacccattctt 60
Query: 74 ggtttccagggttgccctggaa 95
|||||| ||||||||| |||||
Sbjct: 61 ggtttcaagggttgccatggaa 82
>33419_bta-mir-551a:mirbase
Length = 95
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 22 gaaatccagagtgggtggggcctgtctgaccgtttctaggcgacccactcttggtttcca 81
|||| |||||| |||| |||||||||||| |||||| ||||||||| ||||||||||||
Sbjct: 21 gaaacccagagcaggtgaggcctgtctgactgtttctgggcgacccaatcttggtttcca 80
Query: 82 gggttgccctggaa 95
|||||||||||||
Sbjct: 81 tggttgccctggaa 94
