miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00892;mir-551;ABRQ01321591.1/2376-2461 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 143 bits (72), Expect = 5e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 13 tggcccatgaaatcaagcgtgggtgagacctggtgcagaacgggaaggcgacccatactt 72
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 7 tggcccatgaaatcaagcgtgggtgagacctggtgcaaaacaggaaggcgacccatactt 66
Query: 73 ggtttcagaggctgcgagaa 92
||||||||||||||||||||
Sbjct: 67 ggtttcagaggctgcgagaa 86
>RF00892;mir-551;AAKN02050963.1/24909-24994 10141:Cavia porcellus
(domestic guinea pig)
Length = 86
Score = 127 bits (64), Expect = 3e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 13 tggcccatgaaatcaagcgtgggtgagacctggtgcagaacgggaaggcgacccatactt 72
||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 7 tggcccaggaaatcaagcgtgggtgagacctggtgcggaaggggaaggcgacccatactt 66
Query: 73 ggtttcagaggctgcgagaa 92
||||||||||||||| ||||
Sbjct: 67 ggtttcagaggctgcaagaa 86
>RF00892;mir-551;AAQR01614836.1/887-972 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 117 bits (59), Expect = 3e-26
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 14 ggcccatgaaatcaagcgtgggtgagacctggtgcagaacgggaaggcgacccatacttg 73
||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 8 ggcccgtgaaatcaagcgtgggtgagacctggtgcagaacaggaaggcgacccacacttg 67
Query: 74 gtttcagaggctgcgagaa 92
||||||| ||||| |||||
Sbjct: 68 gtttcaggggctgtgagaa 86
>RF00892;mir-551;AANN01687869.1/1924-1838 9365:Erinaceus europaeus
(western European hedgehog)
Length = 87
Score = 111 bits (56), Expect = 2e-24
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 7 ctctcctggcccatgaaatcaagcgtgggtgagacctggtgcagaac-gggaaggcgacc 65
|||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||
Sbjct: 1 ctctcctggcccatgaaatcaagcctgggtgagacctggtacagaacaagaaaggcgacc 60
Query: 66 catacttggtttcagaggct 85
||||||||||||||||||||
Sbjct: 61 catacttggtttcagaggct 80
>RF00892;mir-551;AAWZ01032406.1/96128-96215 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 21 gaaatcaagcgtgggtgagacctggtgcaga-acgggaaggcgacccatacttggtttca 79
||||||||| |||||||||||| ||| | | || |||||||||||||||||||||||||
Sbjct: 16 gaaatcaaggttgggtgagacctcgtgaacagactggaaggcgacccatacttggtttca 75
Query: 80 g 80
|
Sbjct: 76 g 76
>RF00892;mir-551;AAFR03046841.1/43899-43813 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 57 aaggcgacccatacttggtttcagaggctgcgagaa 92
|||||||||||||||||||||||| |||| ||||||
Sbjct: 52 aaggcgacccatacttggtttcaggggcttcgagaa 87
>RF00892;mir-551;AADN02021036.1/52994-52908 9031:Gallus gallus
(chicken)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 21 gaaatcaagcgtgggtgagacctggt-gcagaacgggaaggcgacccatacttggtttca 79
||||||||| |||||| |||||| || | | ||| || ||||||||||||||||||||||
Sbjct: 15 gaaatcaagggtgggtaagaccttgtaggataactggcaggcgacccatacttggtttca 74
Query: 80 gaggctg 86
| |||||
Sbjct: 75 ggggctg 81
>RF00892;mir-551;ABQF01023095.1/42853-42939 59729:Taeniopygia
guttata
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 57 aaggcgacccatacttggtttcagaggctg 86
|||||||||||||||||||||||| |||||
Sbjct: 52 aaggcgacccatacttggtttcaggggctg 81
>RF00892;mir-551;AAVX01059360.1/184-266 7868:Callorhinchus milii
(ghost shark)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ggaaggcgacccatacttggtttc 78
||||||||||||||||||||||||
Sbjct: 49 ggaaggcgacccatacttggtttc 72
