miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01032;mir-554;AANU01226456.1/6829-6734 9544:Macaca mulatta
(rhesus monkey)
Length = 96
Score = 149 bits (75), Expect = 8e-36
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 1 cctgagtaacctttgctagtcctgactcagccagtactggtcttagactggtgatgggtc 60
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 2 cctgagtaacctttgctagtcctgactcagccagtactgatcttacactggcagtgggtc 61
Query: 61 agggttcatattttggcatctctctctgggcatct 95
|||||||||||||||||||||||||||||||||||
Sbjct: 62 agggttcatattttggcatctctctctgggcatct 96
>RF01032;mir-554;ABDC01184603.1/13192-13285 30608:Microcebus
murinus (gray mouse lemur)
Length = 94
Score = 75.8 bits (38), Expect = 9e-14
Identities = 79/89 (88%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 1 cctgagtaacctttgctagtcctgactcagccagtactggtcttagac-tggtgatgggt 59
||||||| ||||||||||||||| |||||||||| |||||||| |||| ||||||| | |
Sbjct: 2 cctgagtgacctttgctagtcctaactcagccaggactggtctcagacgtggtgat-gat 60
Query: 60 cagggttcatattttggcatctctctctg 88
|||||||| ||||||||||| |||||||
Sbjct: 61 cagggttc--attttggcatccctctctg 87
>RF01032;mir-554;AAWR02038741.1/40655-40560 9796:Equus caballus
(horse)
Length = 96
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1 cctgagtaacctttgctagtcctgactcagccagtactggtcttaga 47
||||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct: 2 cctgagtaatctttgctagtcccaactcagccaggactggtcttaga 48
>RF01032;mir-554;AAPE01438207.1/1785-1879 59463:Myotis lucifugus
(little brown bat)
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 78/92 (84%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 cctgagtaacctttgctagtcctgactcagccagtactggtcttagactg-gtgatgggt 59
||||||| |||||||||||||| ||||||| | ||||| ||||||| | ||||||| |
Sbjct: 2 cctgagtgacctttgctagtcccagctcagcctggactgg-cttagacagagtgatgg-t 59
Query: 60 cagggttcatattttggcatctctctctgggc 91
|| |||||| ||||||||||| | ||||||||
Sbjct: 60 caaggttcacattttggcatccccctctgggc 91
>RF01032;mir-554;ABRR01269876.1/760-842 30538:Lama pacos (alpaca)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 cctgagtaacctttgctagtcctgactcagcc 32
|||||||||||||||||||||| ||||||||
Sbjct: 2 cctgagtaacctttgctagtcccaactcagcc 33
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 58 gtcagggttcatattttggcatctctctctgggc 91
||||||||||||| ||| ||||||| ||||||||
Sbjct: 46 gtcagggttcatactttagcatctccctctgggc 79
>RF01032;mir-554;ABRN01130956.1/421-513 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 77/91 (84%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 cctgagtaacctttgctagtcctgactcagccagtactggtcttagactggtgatgggtc 60
|||| |||||||| |||||||| |||||||||| |||| ||||||| || | || | ||
Sbjct: 2 cctgcgtaaccttcgctagtcccaactcagccaggactg-tcttagagtgat-atag-tc 58
Query: 61 agggttcatattttggcatctctctctgggc 91
|||||||||||||| ||||| | ||||||||
Sbjct: 59 agggttcatattttagcatcccactctgggc 89
