miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00969;mir-556;CABD01031875.1/6935-6841 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 95
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 atagtaataagaaagatgagctcattgtaatatgagcttcatttatacatttcatattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 atagtaataagaaagatgagctcattgtaatatgagcttcatttatacatttcatattac 61
Query: 61 cattagctcatcttttttattactaccttcaaca 94
||||||||||||||||||||||||||||||||||
Sbjct: 62 cattagctcatcttttttattactaccttcaaca 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 52 tcatattaccattagctcatcttttttattacta 85
||||||||| || ||||||||||| |||||||||
Sbjct: 36 tcatattacaatgagctcatctttcttattacta 3
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 2 tagtaataagaaagatgagctcattgtaatatga 35
||||||||| ||||||||||| || |||||||||
Sbjct: 86 tagtaataaaaaagatgagctaatggtaatatga 53
>RF00969;mir-556;AANU01239714.1/9369-9275 9544:Macaca mulatta
(rhesus monkey)
Length = 95
Score = 115 bits (58), Expect = 1e-25
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 1 atagtaataagaaagatgagctcattgtaatatgagcttcatttatacatttcatattac 60
|||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 2 atagtaatgagaaagatgaactcattgtaatatgagcttcatttatgcatttcatattac 61
Query: 61 cattagctcatctttttt 78
||||||| |||||||||
Sbjct: 62 aattagctgatctttttt 79
>RF00969;mir-556;ABRJ01000062.1/240703-240785 544711:Ajellomyces
capsulatus H88
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 atgagcttcatttatacatttcat 55
||||||||||||||||||||||||
Sbjct: 29 atgagcttcatttatacatttcat 52
