miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00998;mir-562;AANU01247092.1/5986-6080 9544:Macaca mulatta
(rhesus monkey)
Length = 95
Score = 147 bits (74), Expect = 3e-35
Identities = 89/94 (94%)
Strand = Plus / Plus
Query: 1 gtgaaattgctaggtcatatggtcagtctacttttagagtaattgtgaaactgtttttca 60
||||||||||| |||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct: 2 gtgaaattgctgggtcatatggtcagtctactttcagagtaattgtgaaagtatttttca 61
Query: 61 aagtagctgtaccatttgcactccctgtggcaat 94
|||||||||||||||||||| |||||||||||||
Sbjct: 62 aagtagctgtaccatttgcattccctgtggcaat 95
>RF00998;mir-562;CABD01041488.1/1987-2088 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 50 actgtttttcaaagtagctgtaccatttgcactccctgtggcaat 94
||||||||||||||| |||||||||||| || |||| ||||||||
Sbjct: 58 actgtttttcaaagtggctgtaccatttacattcccagtggcaat 102
>RF00998;mir-562;ABRN01253858.1/2432-2532 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 101
Score = 56.0 bits (28), Expect = 8e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 30 acttttagagtaattgtgaaactgtttttcaaagtagctgtaccattt 77
|||||||||| || ||| |||||||||| ||||||||||| |||||||
Sbjct: 36 acttttagagcaactgtcaaactgttttccaaagtagctgcaccattt 83
>RF00998;mir-562;ABVD01435676.1/1334-1432 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 99
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtacca 74
|||||||||||||||||||||||||||
Sbjct: 52 aaactgtttttcaaagtagctgtacca 78
>RF00998;mir-562;AAWR02009426.1/104768-104868 9796:Equus caballus
(horse)
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
||||||| ||||||||||||||||||||||
Sbjct: 54 aaactgtctttcaaagtagctgtaccattt 83
>RF00998;mir-562;AAWR02018789.1/32721-32619 9796:Equus caballus
(horse)
Length = 103
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
|||||||||| |||||||||||||||||||
Sbjct: 56 aaactgttttccaaagtagctgtaccattt 85
>RF00998;mir-562;AAPE01109132.1/134-33 59463:Myotis lucifugus
(little brown bat)
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
||||||||||||||||| ||||||||||||
Sbjct: 55 aaactgtttttcaaagtggctgtaccattt 84
>RF00998;mir-562;ABDC01118488.1/720-618 30608:Microcebus murinus
(gray mouse lemur)
Length = 103
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
||||||| ||||||||||||||||||||||
Sbjct: 56 aaactgtctttcaaagtagctgtaccattt 85
>RF00998;mir-562;ABDC01111995.1/4573-4675 30608:Microcebus murinus
(gray mouse lemur)
Length = 103
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
|||||||||| |||||||||||||||||||
Sbjct: 56 aaactgttttccaaagtagctgtaccattt 85
>RF00998;mir-562;AANU01277556.1/11367-11464 9544:Macaca mulatta
(rhesus monkey)
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
||||||||||||||||| ||||||||||||
Sbjct: 52 aaactgtttttcaaagtggctgtaccattt 81
>RF00998;mir-562;ABDC01275737.1/3373-3473 30608:Microcebus murinus
(gray mouse lemur)
Length = 101
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccatttgca 80
||||||||||||||||| |||| ||||||||||
Sbjct: 55 aaactgtttttcaaagtggctgcaccatttgca 87
>RF00998;mir-562;AAWR02009530.1/132146-132044 9796:Equus caballus
(horse)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 54 tttttcaaagtagctgtaccatttgcactccc 85
|||| |||||| ||||||||||||||||||||
Sbjct: 63 ttttccaaagtggctgtaccatttgcactccc 94
>RF00998;mir-562;AAGU02601535.1/1465-1363 9785:Loxodonta africana
(African savanna elephant)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 30 acttttagagtaattgtgaaactgtttttcaaagtagctgtaccattt 77
|||||| ||| || ||| ||||||||||||| ||| ||||||||||||
Sbjct: 38 actttttgaggaactgtcaaactgtttttcatagtggctgtaccattt 85
>RF00998;mir-562;ABVD01741534.1/862-964 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
||||||||||||| ||| ||||||||||||
Sbjct: 56 aaactgtttttcagagtggctgtaccattt 85
>RF00998;mir-562;ABVD01320479.1/5666-5767 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
|||||||||| |||||| ||||||||||||
Sbjct: 56 aaactgttttccaaagtggctgtaccattt 85
>RF00998;mir-562;AAGV020071186.1/1117-1219 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
|||||||||| || ||||||||||||||||
Sbjct: 56 aaactgttttccacagtagctgtaccattt 85
>RF00998;mir-562;AAWR02015579.1/93927-93825 9796:Equus caballus
(horse)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
|||||||||| |||||| ||||||||||||
Sbjct: 56 aaactgttttccaaagtggctgtaccattt 85
>RF00998;mir-562;AAWR02004238.1/12270-12168 9796:Equus caballus
(horse)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
|||||||||| |||||| ||||||||||||
Sbjct: 56 aaactgttttccaaagtggctgtaccattt 85
>RF00998;mir-562;AAWR02032759.1/124576-124474 9796:Equus caballus
(horse)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
||||||| ||||||||| ||||||||||||
Sbjct: 56 aaactgtctttcaaagtggctgtaccattt 85
>RF00998;mir-562;AAWR02023870.1/14658-14556 9796:Equus caballus
(horse)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
|||||||||| |||||||||||||| ||||
Sbjct: 56 aaactgttttccaaagtagctgtactattt 85
>RF00998;mir-562;AAPE01093604.1/1324-1224 59463:Myotis lucifugus
(little brown bat)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
||||||| ||||||||| ||||||||||||
Sbjct: 54 aaactgtctttcaaagtggctgtaccattt 83
>RF00998;mir-562;ABRN01164200.1/9718-9819 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
|||||||||| |||||| ||||||||||||
Sbjct: 55 aaactgttttccaaagtggctgtaccattt 84
>RF00998;mir-562;AAEX02019180.1/161867-161963 9615:Canis lupus
familiaris (dog)
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 tgtttttcaaagtagctgtaccattt 77
||||||||||||||| ||||||||||
Sbjct: 54 tgtttttcaaagtagttgtaccattt 79
>RF00998;mir-562;ABGA01112596.1/2161-2263 9601:Pongo abelii
(Sumatran orangutan)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
|||||||||| |||||| ||||||||||||
Sbjct: 56 aaactgttttccaaagtggctgtaccattt 85
>RF00998;mir-562;AADC01106276.1/12637-12535 9606:Homo sapiens
(human)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
||||||| |||||||||| |||||||||||
Sbjct: 56 aaactgtctttcaaagtaactgtaccattt 85
>RF00998;mir-562;AC023566.11/3791-3893 9606:Homo sapiens (human)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
|||||||||| |||||| ||||||||||||
Sbjct: 56 aaactgttttccaaagtggctgtaccattt 85
>RF00998;mir-562;AADD01039552.1/17454-17556 9606:Homo sapiens
(human)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
||||| |||| |||||||||||||||||||
Sbjct: 56 aaactcttttccaaagtagctgtaccattt 85
>RF00998;mir-562;AANU01204706.1/687-586 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
|||||||||| ||||| |||||||||||||
Sbjct: 55 aaactgttttccaaagcagctgtaccattt 84
>RF00998;mir-562;AAGU02215370.1/210-108 9785:Loxodonta africana
(African savanna elephant)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
||||||||||||| |||||| |||||||||
Sbjct: 56 aaactgtttttcacagtagcagtaccattt 85
>RF00998;mir-562;AAGU02089441.1/2225-2124 9785:Loxodonta africana
(African savanna elephant)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaactgtttttcaaagtagctgtaccattt 77
||||||||||||| ||| ||||||||||||
Sbjct: 55 aaactgtttttcacagtggctgtaccattt 84
>RF00998;mir-562;ABRQ01293910.1/647-552 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 tgtttttcaaagtagctgtaccattt 77
|||||||||||| |||||||||||||
Sbjct: 53 tgtttttcaaagcagctgtaccattt 78
