miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01018;mir-569;AADA01007150.1/3394-3489 9598:Pan troglodytes
(chimpanzee)
Length = 96
Score = 188 bits (95), Expect = 9e-48
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 ggtattgttagattaattttgtgggacattaacgacagcatcagaagcaacatcagcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtattgttagattaattttgtgggacattaacgacagcatcagaagcaacatcagcttt 60
Query: 61 agttaatgaatcctggaaagttaagtgactttatt 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 agttaatgaatcctggaaagttaagtgactttatt 95
>RF01018;mir-569;ABRQ01300217.1/1255-1160 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 121 bits (61), Expect = 2e-27
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 2 gtattgttagattaattttgtgggacattaacgacagcatcagaagcaacatcagcttta 61
|||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct: 2 gtattgttagattaattttgtgggacattaacagcagcatcagcagcaacattgacttta 61
Query: 62 gttaatgaatcctggaaagttaagtgactttat 94
||||||||||||||| ||||||||||||||||
Sbjct: 62 gttaatgaatcctggtgagttaagtgactttat 94
>RF01018;mir-569;ABRR01169379.1/15397-15302 30538:Lama pacos
(alpaca)
Length = 96
Score = 115 bits (58), Expect = 1e-25
Identities = 85/94 (90%)
Strand = Plus / Plus
Query: 2 gtattgttagattaattttgtgggacattaacgacagcatcagaagcaacatcagcttta 61
|||||||||||||||||||||||||||||||| |||||| ||| |||||||||| |||||
Sbjct: 2 gtattgttagattaattttgtgggacattaactacagcagcagcagcaacatcaacttta 61
Query: 62 gttaatgaatcctggaaagttaagtgactttatt 95
||||||| ||||| | ||||||||| ||| ||||
Sbjct: 62 gttaatgcatcctagcaagttaagtaactctatt 95
>RF01018;mir-569;AAIY01309527.1/1347-1442 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 96
Score = 105 bits (53), Expect = 1e-22
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 ggtattgttagattaattttgtgggacattaacgacagcatcagaagcaacatcagcttt 60
|||||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||||
Sbjct: 1 ggtattgttagattcattttgtgggacattaacaacagcatcagcagcaacatcgacttt 60
Query: 61 agttaatgaatcc 73
|||||||||||||
Sbjct: 61 agttaatgaatcc 73
>RF01018;mir-569;ABRN01129275.1/7873-7779 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 95
Score = 101 bits (51), Expect = 2e-21
Identities = 82/91 (90%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 ggtattgttagattaattttgtgggacattaacgacagcatcagaagcaacatcagcttt 60
||||||||||||||||||| ||||||||||||| ||||| |||| |||||| ||| ||||
Sbjct: 1 ggtattgttagattaattt-gtgggacattaactacagcgtcagcagcaacgtcaacttt 59
Query: 61 agttaatgaatcctggaaagttaagtgactt 91
|||||||||||||||| |||||||| ||||
Sbjct: 60 agttaatgaatcctggcgagttaagtaactt 90
>RF01018;mir-569;ABRT010181627.1/6117-6023 9478:Tarsius syrichta
(Philippine tarsier)
Length = 95
Score = 85.7 bits (43), Expect = 9e-17
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 13 ttaattttgtgggacattaacgacagcatcagaagcaacatcagctttagttaatgaatc 72
|||||||||||||| |||||| |||||||||| |||||||||| ||| | ||||||||||
Sbjct: 13 ttaattttgtgggatattaacaacagcatcagcagcaacatcaacttca-ttaatgaatc 71
Query: 73 ctggaaagttaagtgactttatt 95
|||| ||||||||| |||||||
Sbjct: 72 ctggcaagttaagtagctttatt 94
>RF01018;mir-569;AAPY01270647.1/842-751 37347:Tupaia belangeri
(northern tree shrew)
Length = 92
Score = 83.8 bits (42), Expect = 4e-16
Identities = 81/92 (88%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 4 attgttagattaattttgtgggacattaacgacagcatcagaagcaacatcagctttagt 63
|||||||||||| ||||||||||||||||| ||| |||||| |||| || | ||||||
Sbjct: 4 attgttagatta-ttttgtgggacattaacaacaccatcagcagcagcaac---tttagt 59
Query: 64 taatgaatcctggaaagttaagtgactttatt 95
||||||||| ||| ||||||||||||||||||
Sbjct: 60 taatgaatcttggcaagttaagtgactttatt 91
>RF01018;mir-569;CAAA01079171.1/10546-10452 10090:Mus musculus
(house mouse)
Length = 95
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 3 tattgttagattaattttgtgggacattaacgacagcatcagaagcaacatcagctttag 62
||||||||||||||||||||||||||||||| ||| ||| | |||||||||| | ||||
Sbjct: 3 tattgttagattaattttgtgggacattaacaacaccataggcagcaacatcaaccttag 62
Query: 63 ttaatgaatcc 73
||||||||||
Sbjct: 63 ctaatgaatcc 73
>RF01018;mir-569;ABRP01020918.1/8733-8636 132908:Pteropus vampyrus
(large flying fox)
Length = 98
Score = 69.9 bits (35), Expect = 6e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 1 ggtattgttagattaattttgtgggacattaacgacagcatcagaagcaacatcagcttt 60
|||||| ||| ||||||||||||| || ||||| |||| || || |||||||||| ||||
Sbjct: 1 ggtattattatattaattttgtggaacgttaactacagtattagcagcaacatcaacttt 60
Query: 61 agttaatgaat 71
|||||||||||
Sbjct: 61 agttaatgaat 71
>RF01018;mir-569;AAKN02051025.1/41128-41033 10141:Cavia porcellus
(domestic guinea pig)
Length = 96
Score = 69.9 bits (35), Expect = 6e-12
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 1 ggtattgttagattaattttgtgggacattaacgacagcatcagaagcaacatcagcttt 60
||||||||||||||||||||||||||||||||| |||||||| ||||| || |||
Sbjct: 1 ggtattgttagattaattttgtgggacattaacactagcatcagtagcaatattcacttg 60
Query: 61 agttaatgaatcctggaaagttaagtgactttatt 95
| || ||||||||| |||||||||||||||||
Sbjct: 61 acatagtgaatcctgctgagttaagtgactttatt 95
>RF01018;mir-569;AANN01582903.1/10569-10474 9365:Erinaceus
europaeus (western European hedgehog)
Length = 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 2 gtattgttagattaattttgtgggacattaacgacagcatcagaagcaacatcagcttta 61
||||||| ||||||||||| ||| ||||||| | |||||||| ||| ||| || ||
Sbjct: 2 gtattgtgcgattaattttgcggggcattaactaaagcatcagcagcggcattgactgta 61
Query: 62 gttaatgaatcctgg 76
|||||||||||||||
Sbjct: 62 gttaatgaatcctgg 76
>RF01018;mir-569;ABRO01034937.1/1072-977 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 3 tattgttagattaattttgtgggacattaa 32
|||||||||||||||||| ||| |||||||
Sbjct: 3 tattgttagattaattttatggaacattaa 32
