miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28893_hsa-mir-579:mirbase
Length = 98
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 atattaggttaatgcaaaagtaatcgcggtttgtgccagatgacgatttgaattaataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 atattaggttaatgcaaaagtaatcgcggtttgtgccagatgacgatttgaattaataaa 61
Query: 61 ttcatttggtataaaccgcgattatttttgcatcaac 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttcatttggtataaaccgcgattatttttgcatcaac 98
>31158_ppy-mir-579:mirbase
Length = 98
Score = 184 bits (93), Expect = 8e-48
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1 atattaggttaatgcaaaagtaatcgcggtttgtgccagatgacgatttgaattaataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2 atattaggttaatgcaaaagtaatcgcggtttgtgccagatgacgatttgaattagtaaa 61
Query: 61 ttcatttggtataaaccgcgattatttttgcatcaac 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttcatttggtataaaccgcgattatttttgcatcaac 98
>28027_mml-mir-579:mirbase
Length = 98
Score = 157 bits (79), Expect = 2e-39
Identities = 91/95 (95%)
Strand = Plus / Plus
Query: 1 atattaggttaatgcaaaagtaatcgcggtttgtgccagatgacgatttgaattaataaa 60
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 2 atattaggttaatgcaaaagtaatcgcggtttgtgccaaatggcgatttgaattaataaa 61
Query: 61 ttcatttggtataaaccgcgattatttttgcatca 95
||||||||||| |||||||||||| ||||||||||
Sbjct: 62 ttcatttggtacaaaccgcgattacttttgcatca 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 atgcaaaagtaatcgcggtttgtgccagatga 43
||||||||||||||||||||||| ||| ||||
Sbjct: 94 atgcaaaagtaatcgcggtttgtaccaaatga 63
>28832_hsa-mir-548h-2:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 tattaggttaatgcaaaagtaatcgcggttt 32
||||||||| ||||||||||||||||||||
Sbjct: 2 tattaggttggtgcaaaagtaatcgcggttt 32
>28833_hsa-mir-548h-3:mirbase
Length = 118
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 tattaggttaatgcaaaagtaatcgcggttt 32
||||||||| ||||||||||||||||||||
Sbjct: 15 tattaggttggtgcaaaagtaatcgcggttt 45
>28834_hsa-mir-548h-4:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 tattaggttaatgcaaaagtaatcgcggttt 32
||||||||| ||||||||||||||||||||
Sbjct: 3 tattaggttggtgcaaaagtaatcgcggttt 33
>28818_hsa-mir-548c:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 2 tattaggttaatgcaaaagtaatcgcggtttgtgcca 38
||||||||| |||||||||||| ||||||| |||||
Sbjct: 11 tattaggttggtgcaaaagtaattgcggtttttgcca 47
>28819_hsa-mir-548c:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 2 tattaggttaatgcaaaagtaatcgcggtttgtgcca 38
||||||||| |||||||||||| ||||||| |||||
Sbjct: 11 tattaggttggtgcaaaagtaattgcggtttttgcca 47
>28857_hsa-mir-548z:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 2 tattaggttaatgcaaaagtaatcgcggtttgtgcca 38
||||||||| |||||||||||| ||||||| |||||
Sbjct: 87 tattaggttggtgcaaaagtaattgcggtttttgcca 51
>30473_ptr-mir-548c:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 2 tattaggttaatgcaaaagtaatcgcggtttgtgcca 38
||||||||| |||||||||||| ||||||| |||||
Sbjct: 11 tattaggttggtgcaaaagtaattgcggtttttgcca 47
>28831_hsa-mir-548h-1:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 tgcaaaagtaatcgcggttt 32
||||||||||||||||||||
Sbjct: 18 tgcaaaagtaatcgcggttt 37
>30476_ptr-mir-548h:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 tgcaaaagtaatcgcggttt 32
||||||||||||||||||||
Sbjct: 18 tgcaaaagtaatcgcggttt 37
