miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00987;mir-589;AANU01170262.1/1936-1838 9544:Macaca mulatta
(rhesus monkey)
Length = 99
Score = 165 bits (83), Expect = 1e-40
Identities = 95/99 (95%)
Strand = Plus / Plus
Query: 1 tccagcctgtgcccagcagcccctgagaaccatgtctgctctgagctgggtactgcctgt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tccagcctgtgcccagcagcccctgagaaccacgtctgctctgagctgggtactgcctgt 60
Query: 61 tcagaacaaacgccggttcccagacgctgccagctggcc 99
|||||||| |||| | |||||||||||||||||||||||
Sbjct: 61 tcagaacagacgctgcttcccagacgctgccagctggcc 99
>RF00987;mir-589;AAQR01424360.1/1172-1073 30611:Otolemur garnettii
(small-eared galago)
Length = 100
Score = 103 bits (52), Expect = 4e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 4 agcctgtgcccagcagcccctgagaaccatgtctgctctgagctgggtactgcctgttca 63
||||||||||| |||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct: 4 agcctgtgcccggcagccactgagaactacgtctgctctgagctgggtactgcctgttca 63
Query: 64 gaacaaac 71
||||||||
Sbjct: 64 gaacaaac 71
>RF00987;mir-589;AAQQ01679163.1/565-658 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 94
Score = 91.7 bits (46), Expect = 2e-18
Identities = 64/69 (92%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 10 tgcccagcagcccctgagaaccatgtctgctctgagctgggtactgcctgttcagaacaa 69
|||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6 tgcccagcagccgc--agaaccatgtctgctctgagctgggtactgtctgttcagaacaa 63
Query: 70 acgccggtt 78
|| ||||||
Sbjct: 64 acaccggtt 72
>RF00987;mir-589;AAEX02011542.1/28051-28146 9615:Canis lupus
familiaris (dog)
Length = 96
Score = 77.8 bits (39), Expect = 2e-14
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 23 ctgagaaccatgtctgctctgagctgggtactgcctgttcagaacaaacgccggt 77
|||||||||||||||| || |||||||||||||||||||||||||| || |||||
Sbjct: 19 ctgagaaccatgtctgatcagagctgggtactgcctgttcagaacagacaccggt 73
