miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28905_hsa-mir-590:mirbase
Length = 97
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 61
Query: 61 tatgtataagctagtctctgattgaaacatgcagca 96
||||||||||||||||||||||||||||||||||||
Sbjct: 62 tatgtataagctagtctctgattgaaacatgcagca 97
>28906_hsa-mir-590:mirbase
Length = 97
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 61
Query: 61 tatgtataagctagtctctgattgaaacatgcagca 96
||||||||||||||||||||||||||||||||||||
Sbjct: 62 tatgtataagctagtctctgattgaaacatgcagca 97
>31169_ppy-mir-590:mirbase
Length = 97
Score = 174 bits (88), Expect = 7e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 1 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 agccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcaatctgtaattt 61
Query: 61 tatgtataagctagtctctgattgaaacatgcagca 96
|||||||||||||||||||||||||||| |||||||
Sbjct: 62 tatgtataagctagtctctgattgaaacgtgcagca 97
>31170_ppy-mir-590:mirbase
Length = 97
Score = 174 bits (88), Expect = 7e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 1 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 agccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcaatctgtaattt 61
Query: 61 tatgtataagctagtctctgattgaaacatgcagca 96
|||||||||||||||||||||||||||| |||||||
Sbjct: 62 tatgtataagctagtctctgattgaaacgtgcagca 97
>32219_mmu-mir-590:mirbase
Length = 81
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 5 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
Query: 65 tataagctagtctctgattga 85
|||||||||||||||||||||
Sbjct: 61 tataagctagtctctgattga 81
>32220_mmu-mir-590:mirbase
Length = 81
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 5 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
Query: 65 tataagctagtctctgattga 85
|||||||||||||||||||||
Sbjct: 61 tataagctagtctctgattga 81
>28037_mml-mir-590:mirbase
Length = 97
Score = 143 bits (72), Expect = 3e-35
Identities = 90/96 (93%)
Strand = Plus / Plus
Query: 1 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 60
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 2 agccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattt 61
Query: 61 tatgtataagctagtctctgattgaaacatgcagca 96
|||||||||||| |||||| | |||||| |||||||
Sbjct: 62 tatgtataagctggtctctaactgaaacgtgcagca 97
>28038_mml-mir-590:mirbase
Length = 97
Score = 143 bits (72), Expect = 3e-35
Identities = 90/96 (93%)
Strand = Plus / Plus
Query: 1 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 60
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 2 agccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattt 61
Query: 61 tatgtataagctagtctctgattgaaacatgcagca 96
|||||||||||| |||||| | |||||| |||||||
Sbjct: 62 tatgtataagctggtctctaactgaaacgtgcagca 97
>27238_eca-mir-590:mirbase
Length = 81
Score = 91.7 bits (46), Expect = 9e-20
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 7 tcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatgta 66
||||||| |||||||||||||||||| |||||| | ||| || |||||||||||||||
Sbjct: 4 tcagaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttatgta 63
Query: 67 taagctagtctctgattg 84
||||||||||||||||||
Sbjct: 64 taagctagtctctgattg 81
>27239_eca-mir-590:mirbase
Length = 81
Score = 91.7 bits (46), Expect = 9e-20
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 7 tcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatgta 66
||||||| |||||||||||||||||| |||||| | ||| || |||||||||||||||
Sbjct: 4 tcagaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttatgta 63
Query: 67 taagctagtctctgattg 84
||||||||||||||||||
Sbjct: 64 taagctagtctctgattg 81
>31563_oan-mir-590:mirbase
Length = 122
Score = 89.7 bits (45), Expect = 3e-19
Identities = 79/89 (88%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 60
||||| |||||||||||||||| ||||||||| |||||| || | || || ||||| |||
Sbjct: 17 agccaatcagaaatgagcttatccataaaagtacagtatcgtca-gtaaacctgtacttt 75
Query: 61 tatgtataagctagtctctgattgaaaca 89
|||| ||||||||||||||||||||||||
Sbjct: 76 tatggataagctagtctctgattgaaaca 104
>26887_cfa-mir-590:mirbase
Length = 61
Score = 73.8 bits (37), Expect = 2e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 15 gagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatgtataagctag 74
|||||||||||||||||| ||||||| | ||| || |||||||||||||||||||||||
Sbjct: 1 gagcttattcataaaagtacagtatgatccagtaaacctgtaattttatgtataagctag 60
Query: 75 t 75
|
Sbjct: 61 t 61
