miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00928;mir-590;AANU01190949.1/13092-13188 9544:Macaca mulatta
(rhesus monkey)
Length = 97
Score = 143 bits (72), Expect = 5e-34
Identities = 90/96 (93%)
Strand = Plus / Plus
Query: 1 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 60
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 2 agccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattt 61
Query: 61 tatgtataagctagtctctgattgaaacatgcagca 96
|||||||||||| |||||| | |||||| |||||||
Sbjct: 62 tatgtataagctggtctctaactgaaacgtgcagca 97
>RF00928;mir-590;AAQQ01313324.1/3303-3207 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 97
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 1 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 60
|||||||||||||||||||||||||||||||| |||||| | ||| | ||||||||||
Sbjct: 2 agccagtcagaaatgagcttattcataaaagtacagtatcatccagtaagtctgtaattt 61
Query: 61 tatgtataagctagtctctgattgaa 86
|||||||||||| |||||||| ||||
Sbjct: 62 tatgtataagctggtctctgactgaa 87
>RF00928;mir-590;AAPN01308740.1/1340-1245 9258:Ornithorhynchus
anatinus (platypus)
Length = 96
Score = 89.7 bits (45), Expect = 6e-18
Identities = 79/89 (88%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 60
||||| |||||||||||||||| ||||||||| |||||| || | || || ||||| |||
Sbjct: 2 agccaatcagaaatgagcttatccataaaagtacagtatcgtca-gtaaacctgtacttt 60
Query: 61 tatgtataagctagtctctgattgaaaca 89
|||| ||||||||||||||||||||||||
Sbjct: 61 tatggataagctagtctctgattgaaaca 89
>RF00928;mir-590;AAPY01718744.1/4971-4879 37347:Tupaia belangeri
(northern tree shrew)
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 78/90 (86%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 4 cagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttat 63
||||||||| ||||||||||||||||||| |||||| || ||| |||| |||||
Sbjct: 5 cagtcagaagtgagcttattcataaaagtacagtat----aatacaacaagtaactttat 60
Query: 64 gtataagctagtctctgattgaaacatgca 93
||||||||||||||||||||||||||||||
Sbjct: 61 gtataagctagtctctgattgaaacatgca 90
>RF00928;mir-590;AAGV020627533.1/2369-2273 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 97
Score = 75.8 bits (38), Expect = 9e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 52 ctgtaattttatgtataagctagtctctgattgaaacatgca 93
|||||||||||||||||| |||||||||||||||||||||||
Sbjct: 53 ctgtaattttatgtataaactagtctctgattgaaacatgca 94
>RF00928;mir-590;AAGW01523546.1/6054-5958 9986:Oryctolagus
cuniculus (rabbit)
Length = 97
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 agccagtcagaaatgagcttattcataaaagtgcagta 38
|||||||| |||||||||||||||||||||||||||||
Sbjct: 2 agccagtcggaaatgagcttattcataaaagtgcagta 39
>RF00928;mir-590;AAGU02451779.1/3421-3513 9785:Loxodonta africana
(African savanna elephant)
Length = 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 52 ctgtaattttatgtataagctagtctctgattgaaacatgcagca 96
|||| ||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 49 ctgtgattttatgtataaactagtctctcattgaaacatgcagca 93
>RF00928;mir-590;AAKN02032050.1/70084-69998 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 agtcagaaatgagcttattcataaaagtgc 34
|||||||| |||||||||||||||||||||
Sbjct: 2 agtcagaagtgagcttattcataaaagtgc 31
