miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AADA01227318.1/1437-1341 9598:Pan troglodytes
(chimpanzee)
Length = 97
Score = 172 bits (87), Expect = 5e-43
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 6 atgatgctgctgatgctggcggtgatcccgatggtgtgagctggaaatggggtgctacgt 65
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 atgatgctggtgatgctggcggtgatcccgatggtgtgagctggaaatggggtgctacgt 65
Query: 66 catcgttgtcatcgtcatcatcatcatccga 96
|||||||||||||||||||||||||||||||
Sbjct: 66 catcgttgtcatcgtcatcatcatcatccga 96
>RF01059;mir-598;AAGU02638220.1/6389-6484 9785:Loxodonta africana
(African savanna elephant)
Length = 96
Score = 133 bits (67), Expect = 5e-31
Identities = 86/91 (94%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 3 ttgatgatgctgctgatgctggcggtgatcccgatggtgtgagctggaaatggggtgcta 62
|||||||| |||||||||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct: 3 ttgatgatactgctgatgctggcggtgatgccgatggtgggagctggaaat-aggtgcta 61
Query: 63 cgtcatcgttgtcatcgtcatcatcatcatc 93
|||||||||||||||||||||||||||||||
Sbjct: 62 cgtcatcgttgtcatcgtcatcatcatcatc 92
>RF01059;mir-598;ABDC01461977.1/439-343 30608:Microcebus murinus
(gray mouse lemur)
Length = 97
Score = 127 bits (64), Expect = 3e-29
Identities = 88/96 (91%)
Strand = Plus / Plus
Query: 1 gcttgatgatgctgctgatgctggcggtgatcccgatggtgtgagctggaaatggggtgc 60
|||||| ||||||||||||||||||||||| ||||||| |||||||||| | ||||||
Sbjct: 1 gcttgacgatgctgctgatgctggcggtgacaccgatggcgtgagctggagacagggtgc 60
Query: 61 tacgtcatcgttgtcatcgtcatcatcatcatccga 96
||||||||||||||||||||||||||||||| ||||
Sbjct: 61 tacgtcatcgttgtcatcgtcatcatcatcacccga 96
>RF01059;mir-598;AC118607.12/167329-167233 10090:Mus musculus
(house mouse)
Length = 97
Score = 127 bits (64), Expect = 3e-29
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 6 atgatgctgctgatgctggcggtgatcccgatggtgtgagctggaaatggggtgctacgt 65
|||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||
Sbjct: 6 atgatgctgctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgt 65
Query: 66 catcgttgtcatcgtcatcatcatcatc 93
|||||| |||||||| ||||||||||||
Sbjct: 66 catcgtcgtcatcgttatcatcatcatc 93
>RF01059;mir-598;AAFC03106541.1/8060-7964 9913:Bos taurus (cattle)
Length = 97
Score = 81.8 bits (41), Expect = 1e-15
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 2 cttgatgatgctgctgatgctggcggtgatcccgatggtgtgagctggaaatggggtgct 61
||||||| | ||||||||||||| |||||| ||||||||| |||||||| |||||||
Sbjct: 2 cttgatggtactgctgatgctggtggtgatgccgatggtgcgagctggacggtgggtgct 61
Query: 62 acgtcatcgttgtcatcgtcatcatcatcatcc 94
||| |||| ||||| |||||||| |||||||||
Sbjct: 62 acggcatcattgtcgtcgtcatcgtcatcatcc 94
>RF01059;mir-598;AAHX01053836.1/31844-31935 10116:Rattus
norvegicus (Norway rat)
Length = 92
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 63 cgtcatcgttgtcatcgtcatcatcatc 90
||||||||||||||||||||||||||||
Sbjct: 49 cgtcatcgttgtcatcgtcatcatcatc 22
>RF01059;mir-598;ABRP01290772.1/2586-2683 132908:Pteropus vampyrus
(large flying fox)
Length = 98
Score = 54.0 bits (27), Expect = 3e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 48 ggaaatggggtgctacgtcatcgttgtcatcgt-catcatcatcatc 93
|||||||||| ||||||||| ||||||||||| |||||||||||||
Sbjct: 48 ggaaatggggagctacgtcactgttgtcatcgtccatcatcatcatc 94
>RF01059;mir-598;AAWZ01026015.1/37849-37943 28377:Anolis
carolinensis (green anole)
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 70 gttgtcatcgtcatcatcatcatc 93
||||||||||||||||||||||||
Sbjct: 58 gttgtcatcgtcatcatcatcatc 35
>RF01059;mir-598;AABR04022525.1/3795-3700 10116:Rattus norvegicus
(Norway rat)
Length = 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 63 cgtcatcgttgtcatcgtcatcatcatcatc 93
||||||||| |||||| ||||||||||||||
Sbjct: 50 cgtcatcgtcgtcatcatcatcatcatcatc 80
>RF01059;mir-598;AABR04000561.1/12890-12985 10116:Rattus
norvegicus (Norway rat)
Length = 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 63 cgtcatcgttgtcatcgtcatcatcatcatc 93
||||||||| ||||||||||||||||||||
Sbjct: 62 cgtcatcgtcatcatcgtcatcatcatcatc 92
>RF01059;mir-598;AAHY01469015.1/759-665 10090:Mus musculus (house
mouse)
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 63 cgtcatcgttgtcatcgtcatcatcatcatc 93
||||||| | |||||||||||||||||||||
Sbjct: 52 cgtcatcatcgtcatcgtcatcatcatcatc 82
>RF01059;mir-598;AAZO01006288.1/10382-10458 121224:Pediculus
humanus corporis (human body louse)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 63 cgtcatcgttgtcatcgtcatcatcatcatc 93
||||||||| |||||| ||||||||||||||
Sbjct: 47 cgtcatcgtcgtcatcatcatcatcatcatc 17
>RF01059;mir-598;AC115598.2/34724-34823 44689:Dictyostelium
discoideum
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 63 cgtcatcgttgtcatcgtcatcatcatcatc 93
|||| |||| |||||||||||||||||||||
Sbjct: 63 cgtcgtcgtcgtcatcgtcatcatcatcatc 93
>RF01059;mir-598;ABGA01315580.1/6875-6786 9601:Pongo abelii
(Sumatran orangutan)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 68 tcgttgtcatcgtcatcatcatcatc 93
|||||||| |||||||||||||||||
Sbjct: 64 tcgttgtcgtcgtcatcatcatcatc 39
