miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00991;mir-599;ABRQ01087343.1/1788-1694 9813:Procavia capensis
(cape rock hyrax)
Length = 95
Score = 149 bits (75), Expect = 7e-36
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 5 acatgctgtccacagtgtgtttgataagctgacatgggacagggattcttttcactgttg 64
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5 acatgctgtccacagtgtgtttgataagctgacatgggacaggatttcttttcactgttg 64
Query: 65 tgtcagtttatcaaacccatacttgga 91
|||||||||||||||||||||| ||||
Sbjct: 65 tgtcagtttatcaaacccatacctgga 91
>RF00991;mir-599;AAQQ01055001.1/924-830 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 95
Score = 135 bits (68), Expect = 1e-31
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 19 gtgtgtttgataagctgacatgggacagggattcttttcactgttgtgtcagtttatcaa 78
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 19 gtgtgtttgataagctgacatgggacagagattcttttcactgttgtgtcagtttatcaa 78
Query: 79 acccatacttggatga 94
|||||||| |||||||
Sbjct: 79 acccatacctggatga 94
>RF00991;mir-599;AAFR03006570.1/12574-12668 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 95
Score = 125 bits (63), Expect = 1e-28
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 10 ctgtccacagtgtgtttgataagctgacatgggacagggattcttttcactgttgtgtca 69
||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||||
Sbjct: 10 ctgtccagagtgtgtttgataatctgacatgggacagaggttcttttcactgttgtgtca 69
Query: 70 gtttatcaaacccatacttggat 92
||||||||||||||||| |||||
Sbjct: 70 gtttatcaaacccatacctggat 92
>RF00991;mir-599;AAPY01575258.1/7264-7170 37347:Tupaia belangeri
(northern tree shrew)
Length = 95
Score = 125 bits (63), Expect = 1e-28
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 4 gacatgctgtccacagtgtgtttgataagctgacatgggacagggattcttttcactgtt 63
|||||||| |||||| ||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 4 gacatgctatccacaatgtgtttgataagctgatataggacagggatttttttcactgtt 63
Query: 64 gtgtcagtttatcaaacccatacttggatga 94
|||||||||||||||||||||| |||||||
Sbjct: 64 gtgtcagtttatcaaacccatatctggatga 94
>RF00991;mir-599;ABRO01008573.1/6484-6390 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 95
Score = 93.7 bits (47), Expect = 4e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 8 tgctgtccacagtgtgtttgataagctgacatgggacagggattcttttcactgttgtgt 67
||||||||| || ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 8 tgctgtccatagcatgtttgataagctgacatgggacaggggttcttttcactgttacat 67
Query: 68 cagtttatcaaacccatac 86
||||||||||| |||||||
Sbjct: 68 cagtttatcaagcccatac 86
>RF00991;mir-599;AC121598.3/75982-76076 10090:Mus musculus (house
mouse)
Length = 95
Score = 85.7 bits (43), Expect = 9e-17
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 8 tgctgtccacagtgtgtttgataagctgacatgggacagggattcttttcactgttgtgt 67
||||||||||||||| ||||||||| |||||| ||| ||| | | |||||| ||||||
Sbjct: 8 tgctgtccacagtgtatttgataagatgacataggagaggaacttctttcacctttgtgt 67
Query: 68 cagtttatcaaacccatacttggatga 94
||||||||||||||||||| |||||||
Sbjct: 68 cagtttatcaaacccatacctggatga 94
>RF00991;mir-599;AAPN01034672.1/28470-28563 9258:Ornithorhynchus
anatinus (platypus)
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 10 ctgtccacagtgtgtttgataagctgacatgggacagg-gattcttttcactgttgtgtc 68
|||||| ||||| |||||||||||| ||||| |||||| | || ||||||| ||||||||
Sbjct: 8 ctgtcctcagtgcgtttgataagctaacatgagacaggagctttttttcacggttgtgtc 67
Query: 69 agtttatca 77
||| |||||
Sbjct: 68 agtgtatca 76
