miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28924_hsa-mir-609:mirbase
Length = 95
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 tgctcggctgttcctagggtgtttctctcatctctggtctataatgggttaaatagtaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctcggctgttcctagggtgtttctctcatctctggtctataatgggttaaatagtaga 60
Query: 61 gatgagggcaacaccctaggaacagcagaggaac 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 gatgagggcaacaccctaggaacagcagaggaac 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 58 agagatgagggcaacaccctaggaacagc 86
||||||||| | |||||||||||||||||
Sbjct: 35 agagatgagagaaacaccctaggaacagc 7
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 7 gctgttcctagggtgtttctctcatctct 35
||||||||||||||||| | |||||||||
Sbjct: 86 gctgttcctagggtgttgccctcatctct 58
>31187_ppy-mir-609:mirbase
Length = 95
Score = 155 bits (78), Expect = 7e-39
Identities = 90/94 (95%)
Strand = Plus / Plus
Query: 1 tgctcggctgttcctagggtgtttctctcatctctggtctataatgggttaaatagtaga 60
||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tgctctgctgttcctagagtgttgctctcatctctggtctataatgggtaaaatagtaga 60
Query: 61 gatgagggcaacaccctaggaacagcagaggaac 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 gatgagggcaacaccctaggaacagcagaggaac 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 58 agagatgagggcaacaccctaggaacagcagag 90
||||||||| ||||||| |||||||||||||||
Sbjct: 35 agagatgagagcaacactctaggaacagcagag 3
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 7 gctgttcctagggtgtttctctcatctct 35
||||||||||||||||| | |||||||||
Sbjct: 86 gctgttcctagggtgttgccctcatctct 58
>28051_mml-mir-609:mirbase
Length = 94
Score = 131 bits (66), Expect = 1e-31
Identities = 88/94 (93%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 1 tgctcggctgttcctagggtgtttctctcatctctggtctataatgggttaaatagtaga 60
||||| ||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct: 1 tgctctgcttttcctagggtgttgctctcatctctggtctataatggggtaaat-gtaga 59
Query: 61 gatgagggcaacaccctaggaacagcagaggaac 94
||||||||||||| ||||||||||||||||||||
Sbjct: 60 gatgagggcaacagcctaggaacagcagaggaac 93
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 58 agagatgagggcaacaccctaggaacagcagag 90
||||||||| ||||||||||||||| |||||||
Sbjct: 35 agagatgagagcaacaccctaggaaaagcagag 3
