miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00879;mir-615;ABRQ01001814.1/3563-3468 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 ctcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcgg 60
Query: 61 tccgagcctgggtctccctct 81
|||||||||||||||||||||
Sbjct: 61 tccgagcctgggtctccctct 81
>RF00879;mir-615;AAYZ01058781.1/113-208 9978:Ochotona princeps
(American pika)
Length = 96
Score = 107 bits (54), Expect = 3e-23
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 1 ctcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcgg 60
|||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct: 1 ctcgggaggggcgggaggggggtccccggtgcccggacctcgagggtgctggccgttcgg 60
Query: 61 tccgagcctgggtctccctctt 82
|||||||||||||||| |||||
Sbjct: 61 tccgagcctgggtctcactctt 82
>RF00879;mir-615;AANN01223825.1/45-138 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 79.8 bits (40), Expect = 6e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 3 cgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggtc 62
||||| ||| || |||||| |||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 3 cgggaagggtggaagggggttccctggtgcacggatctcgagggtgctcattgttcggtt 62
Query: 63 cgagcctgggtctccc 78
|||||||||||||||
Sbjct: 63 tgagcctgggtctccc 78
>RF00879;mir-615;AAIY01793521.1/168-267 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ctcgggaggggcgggaggggggtccc 26
|||||||||||||||| |||||||||
Sbjct: 1 ctcgggaggggcgggacgggggtccc 26
