miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28932_hsa-mir-616:mirbase
Length = 97
Score = 174 bits (88), Expect = 7e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 1 taggtaattcctccactcaaaaccctccagtgacttccatgacatgaaacaggaagtcat 60
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 2 taggtaattcctccactcaaaacccttcagtgacttccatgacatgaaataggaagtcat 61
Query: 61 tggagggtttgagcagaggaatgacctgttttaaaa 96
||||||||||||||||||||||||||||||||||||
Sbjct: 62 tggagggtttgagcagaggaatgacctgttttaaaa 97
>31195_ppy-mir-616:mirbase
Length = 98
Score = 168 bits (85), Expect = 5e-43
Identities = 95/97 (97%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 1 taggtaattcctccactcaaaaccctccagtgacttccatgacatgaaacaggaagtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2 taggtaattcctccactcaaaaccctccagtgacttccatgacatgaaataggaagtcat 61
Query: 61 tggaggg-tttgagcagaggaatgacctgttttaaaa 96
||||||| |||||||||||||||||||||||||||||
Sbjct: 62 tggagggttttgagcagaggaatgacctgttttaaaa 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 2 aggtaattcctccactcaaaaccctccagtgacttcc 38
|||| ||||||| |||||||||||||| ||||||||
Sbjct: 89 aggtcattcctctgctcaaaaccctccaatgacttcc 53
>28056_mml-mir-616:mirbase
Length = 98
Score = 121 bits (61), Expect = 1e-28
Identities = 89/97 (91%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 1 taggtaattcctccactcaaaaccctccagtgacttccatgacatgaaacaggaagtcat 60
|||||||||||||| |||||||||||||| |||||||| |||||||| | |||||||||
Sbjct: 2 taggtaattcctcctctcaaaaccctccaatgacttccctgacatgacataggaagtcac 61
Query: 61 tggag-ggtttgagcagaggaatgacctgttttaaaa 96
||||| | |||||||||||||||||||||||||||||
Sbjct: 62 tggagagttttgagcagaggaatgacctgttttaaaa 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 60/70 (85%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 2 aggtaattcctccactcaaaaccctccagtgacttcc-atgacatgaaacaggaagtcat 60
|||| ||||||| |||||||| |||||||||||||| ||| |||| | |||||||||
Sbjct: 89 aggtcattcctctgctcaaaactctccagtgacttcctatgtcatgtca-gggaagtcat 31
Query: 61 tggagggttt 70
||||||||||
Sbjct: 30 tggagggttt 21
