miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28949_hsa-mir-632:mirbase
Length = 94
Score = 176 bits (89), Expect = 2e-45
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
Query: 61 gtgtctgcttcctgtgggacgcggtggtagccg 93
||||||||||||||||||||| |||||||||||
Sbjct: 61 gtgtctgcttcctgtgggacgtggtggtagccg 93
>28067_mml-mir-632:mirbase
Length = 94
Score = 153 bits (77), Expect = 3e-38
Identities = 89/93 (95%)
Strand = Plus / Plus
Query: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
|||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 cgcctcctgccgcagtgcctgacgggaggcggagcggcgaacgaggccgtcggccatttt 60
Query: 61 gtgtctgcttcctgtgggacgcggtggtagccg 93
||||||||||||||||||||||||| |||||||
Sbjct: 61 gtgtctgcttcctgtgggacgcggtcgtagccg 93
>31208_ppy-mir-632:mirbase
Length = 94
Score = 153 bits (77), Expect = 3e-38
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 cgcctcctaccgcagtgcctgacgggaggcggagcggggaacgagaccgtcggccatttt 60
Query: 61 gtgtctgcttcctgtgggacgcggtggta 89
||||||||||||||||||||| |||||||
Sbjct: 61 gtgtctgcttcctgtgggacgtggtggta 89
>26893_cfa-mir-632:mirbase
Length = 97
Score = 97.6 bits (49), Expect = 1e-21
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
||||||| ||||||||| ||||||||| | |||||| |||||||| |||||||||||||
Sbjct: 1 cgcctccggccgcagtgcctgacgggag-cagagcggcgaacgagggcgtcggccatttt 59
Query: 61 gtgtctgcttcctgtgggacgcggt 85
||||||| |||||||||||||||||
Sbjct: 60 gtgtctgtttcctgtgggacgcggt 84
>27245_eca-mir-632:mirbase
Length = 65
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 20 tgacgggaggcggagcggggaacgaggccgtcggccattttgtgtctgcttcctgtggga 79
|||||||||||||||| | |||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 6 tgacgggaggcggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtggga 65
>32965_rno-mir-632:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 7e-08
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 39 gaacgaggccgtcggccattttgtgtctgcttcctgtgggacgcggtggt 88
|||||||| ||||||||||||||||||| |||||| ||||| ||||||
Sbjct: 25 gaacgagggtgtcggccattttgtgtctgtttcctgccggacgtggtggt 74
