miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABXC01000010.1/150949-151088 4558:Sorghum bicolor
(sorghum)
Length = 140
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 1 gccatctttgatagccaaggatgatttgcctgta 34
||||||||||||||||||||||||||||||||||
Sbjct: 131 gccatctttgatagccaaggatgatttgcctgta 98
>RF00645;MIR169_2;ABXC01000010.1/151081-150955 4558:Sorghum
bicolor (sorghum)
Length = 127
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 gccatctttgatagccaaggatgatttgcctgta 34
||||||||||||||||||||||||||||||||||
Sbjct: 3 gccatctttgatagccaaggatgatttgcctgta 36
>RF00865;MIR169_5;AC096688.4/11614-11485 39947:Oryza sativa Japonica
Group
Length = 130
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 1 gccatctttgatagccaaggatgatttgcctgta 34
|||||||| |||||||||||||||||||||||||
Sbjct: 121 gccatcttcgatagccaaggatgatttgcctgta 88
>RF00865;MIR169_5;ABXC01000010.1/151290-151438 4558:Sorghum bicolor
(sorghum)
Length = 149
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 3 catctttgatagccaaggatgatttgcctgta 34
||||| || |||||||||||||||||||||||
Sbjct: 138 catctctgttagccaaggatgatttgcctgta 107
>RF00645;MIR169_2;ABXC01000010.1/151431-151296 4558:Sorghum
bicolor (sorghum)
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 3 catctttgatagccaaggatgatttgcctgta 34
||||| || |||||||||||||||||||||||
Sbjct: 5 catctctgttagccaaggatgatttgcctgta 36
>RF00865;MIR169_5;AARH01000583.1/30355-30198 3694:Populus
trichocarpa
Length = 158
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 7 tttgatagccaaggatgatttgcctg 32
|||||||||||||||||| |||||||
Sbjct: 144 tttgatagccaaggatgacttgcctg 119
>RF00865;MIR169_5;AARH01009234.1/70247-70410 3694:Populus
trichocarpa
Length = 164
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 7 tttgatagccaaggatgatttgcctg 32
|||||||||||||||||| |||||||
Sbjct: 150 tttgatagccaaggatgacttgcctg 125
>RF00865;MIR169_5;AASG02003632.1/18586-18737 3988:Ricinus communis
(castor bean)
Length = 152
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 7 tttgatagccaaggatgatttgcctg 32
|||||||||||||||||| |||||||
Sbjct: 138 tttgatagccaaggatgacttgcctg 113
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 4 atctttgatagccaaggatgatttgcctgt 33
|||| |||||||||||||||| ||||||||
Sbjct: 116 atctctgatagccaaggatgacttgcctgt 87
>RF00645;MIR169_2;AARH01000583.1/30205-30349 3694:Populus
trichocarpa
Length = 145
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 tttgatagccaaggatgatttgcctg 32
|||||||||||||||||| |||||||
Sbjct: 8 tttgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AC216452.1/111514-111664 3694:Populus
trichocarpa
Length = 151
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 tttgatagccaaggatgatttgcctg 32
|||||||||||||||||| |||||||
Sbjct: 8 tttgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AASG02003632.1/18730-18592 3988:Ricinus communis
(castor bean)
Length = 139
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 tttgatagccaaggatgatttgcctg 32
|||||||||||||||||| |||||||
Sbjct: 8 tttgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 atctttgatagccaaggatgatttgcctgt 33
|||| |||||||||||||||| ||||||||
Sbjct: 2 atctctgatagccaaggatgacttgcctgt 31
