miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01023;mir-940;AANU01106553.1/13297-13390 9544:Macaca mulatta
(rhesus monkey)
Length = 94
Score = 163 bits (82), Expect = 5e-40
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 4 ggtgtgggcccggcccctggagcggggcctgggcagccccgtgtgatgaggaaggaaggc 63
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5 ggtgtgggcccggccccaggagcggggcctgggcagccccgtgtgttgaggaaggaaggc 64
Query: 64 agggcccccgctccccgggcctgaccccac 93
||||||||||||||||||||||||||||||
Sbjct: 65 agggcccccgctccccgggcctgaccccac 94
>RF01023;mir-940;AAGU02491552.1/1433-1523 9785:Loxodonta africana
(African savanna elephant)
Length = 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 27 ggggcctgggcagccccgtgtgatgaggaaggaaggcagggcccccgctccccgggcc 84
|||||||||||||| | ||||| |||||||||||||||||||| | |||||| |||||
Sbjct: 25 ggggcctgggcagctctgtgtgttgaggaaggaaggcagggcctctgctccctgggcc 82
>RF01023;mir-940;AAQR01303091.1/2507-2414 30611:Otolemur garnettii
(small-eared galago)
Length = 94
Score = 65.9 bits (33), Expect = 8e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 15 ggcccctggagcggggcctgggcagccccgtgtgatgaggaaggaaggcagggcccc 71
|||||| ||||| ||| ||||||||||| |||| ||||||||||||||||||||||
Sbjct: 16 ggccccaggagcagggtttgggcagccccatgtgttgaggaaggaaggcagggcccc 72
>RF01023;mir-940;AAQQ01317791.1/554-462 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 22 ggagcggggcctgggcagccccgtgtgatgaggaaggaaggcagggcccccgctccccgg 81
||||| |||||||||||||||| |||| ||||| |||||||||||| ||| | ||||| |
Sbjct: 23 ggagcagggcctgggcagccccatgtgttgagg-aggaaggcagggtccctggtccccag 81
Query: 82 gcctgaccccac 93
||| |||||||
Sbjct: 82 gcccaaccccac 93
>RF01023;mir-940;AAKN02007404.1/42995-43087 10141:Cavia porcellus
(domestic guinea pig)
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 28 gggcctgggcagccccgtgtgatgaggaaggaaggcagggcccccgctccccgggcctga 87
|||||||||||||||| |||| ||||| |||||| |||||||| |||||| |||| |||
Sbjct: 29 gggcctgggcagccccatgtgctgagg-aggaagttagggcccctgctccctgggcttga 87
Query: 88 cccc 91
||||
Sbjct: 88 cccc 91
