miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29044_hsa-mir-942:mirbase
Length = 86
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 attaggagagtatcttctctgttttggccatgtgtgtactcacagcccctcacacatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attaggagagtatcttctctgttttggccatgtgtgtactcacagcccctcacacatggc 60
Query: 61 cgaaacagagaagttactttcctaa 85
|||||||||||||||||||||||||
Sbjct: 61 cgaaacagagaagttactttcctaa 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1 attaggagagtatcttctctgttttggccatgtgtg 36
||||||| |||| ||||||||||| |||||||||||
Sbjct: 86 attaggaaagtaacttctctgtttcggccatgtgtg 51
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 51 cacacatggccgaaacagagaagttactttcctaa 85
||||||||||| ||||||||||| |||| ||||||
Sbjct: 36 cacacatggccaaaacagagaagatactctcctaa 2
>31275_ppy-mir-942:mirbase
Length = 86
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 attaggagagtatcttctctgttttggccatgtgtgtactcacagcccctcacacatggc 60
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 attaggagagtaccttctctgttttggccatgggtgtactcacagcccctcacacatggc 60
Query: 61 cgaaacagagaagttactttcctaa 85
|||||||||||||||||||||||||
Sbjct: 61 cgaaacagagaagttactttcctaa 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1 attaggagagtatcttctctgttttggccatgtgtg 36
||||||| |||| ||||||||||| |||||||||||
Sbjct: 86 attaggaaagtaacttctctgtttcggccatgtgtg 51
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 55 catggccgaaacagagaagttactttcctaa 85
||||||| ||||||||||| |||| ||||||
Sbjct: 32 catggccaaaacagagaaggtactctcctaa 2
>28151_mml-mir-942:mirbase
Length = 86
Score = 137 bits (69), Expect = 1e-33
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 1 attaggagagtatcttctctgttttggccatgtgtgtactcacagcccctcacacatggc 60
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 attaagagagtaccttctctgttttggccatgtgtgtactcacagcccctcacacgtggc 60
Query: 61 cgaaacagagaagttactttcctaa 85
||||||||||||| |||||||||||
Sbjct: 61 cgaaacagagaaggtactttcctaa 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 51 cacacatggccgaaacagagaagttact 78
||||||||||| ||||||||||| ||||
Sbjct: 36 cacacatggccaaaacagagaaggtact 9
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 1 attaggagagtatcttctctgttttggccatgtgtg 36
||||||| |||| ||||||||||| ||||| |||||
Sbjct: 86 attaggaaagtaccttctctgtttcggccacgtgtg 51
