miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02014;mir-1178;AANU01246374.1/48996-48886 9544:Macaca mulatta
(rhesus monkey)
Length = 111
Score = 163 bits (82), Expect = 5e-40
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 gggttggctggcagaggaagggaagggtccggggtcggctgagcatgccctcaggttgct 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 11 gggttggctggcagaggaagggaagggtccggggtcagctgagcatgccctcacgttgct 70
Query: 61 cactgttcttccctagaatgtcaggtgatg 90
||||||||||||||||||||||||||||||
Sbjct: 71 cactgttcttccctagaatgtcaggtgatg 100
>RF02014;mir-1178;AADB02216940.1/526-416 9606:Homo sapiens (human)
Length = 111
Score = 99.6 bits (50), Expect = 6e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 3 gttggctggcagaggaagggaagggtccggggtcggctgagcatgccctcaggttgctca 62
||||||||||| || || |||||||||| ||||| |||||||||||||||||||||||
Sbjct: 13 gttggctggcacagtaaaggaagggtccagggtcacctgagcatgccctcaggttgctcc 72
Query: 63 ctgttcttccctagaatgtcag 84
|||||||| |||||||||||||
Sbjct: 73 ctgttcttacctagaatgtcag 94
>RF02014;mir-1178;ABRT010028237.1/2033-1923 9478:Tarsius syrichta
(Philippine tarsier)
Length = 111
Score = 63.9 bits (32), Expect = 3e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 51 tcaggttgctcactgttcttccctagaatgtcaggtgatg 90
||||||||||||||| |||| |||||||||||||||||||
Sbjct: 61 tcaggttgctcactgctctttcctagaatgtcaggtgatg 100
>RF02014;mir-1178;ABRN01406596.1/4084-3974 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 111
Score = 60.0 bits (30), Expect = 5e-09
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 1 gggttggctggcagaggaagggaagggtccggggtcggctgagcatgccctcaggttgct 60
||||||||||||||||| |||||| ||||| | ||||| ||| || |||||||| |
Sbjct: 11 gggttggctggcagaggcagggaacggtccagcatcggccgagtgtgtgttcaggttgtt 70
Query: 61 cactgttcttccctagaatgtcaggt 86
||||| | ||||||||||||||||||
Sbjct: 71 cactgcttttccctagaatgtcaggt 96
>RF02014;mir-1178;AAGV020043112.1/947-835 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 113
Score = 56.0 bits (28), Expect = 8e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 51 tcaggttgctcactgttcttccctagaatgtcaggtgatg 90
|||||||||| |||| |||||||||||||| |||||||||
Sbjct: 63 tcaggttgctaactgctcttccctagaatgccaggtgatg 102
>RF02014;mir-1178;ABDC01031212.1/7174-7064 30608:Microcebus murinus
(gray mouse lemur)
Length = 111
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 20 gggaagggtccggggtcggctgagcatgccctcaggttgctcactgttcttccctagaat 79
||||||||||| ||||| || ||||||| | ||||||| | | ||| ||| ||||||||
Sbjct: 30 gggaagggtccagggtcagccgagcatgtcttcaggttaccctctgctctgtcctagaat 89
Query: 80 gtcaggtgatg 90
|||||||||||
Sbjct: 90 gtcaggtgatg 100
>RF02014;mir-1178;ABRP01138983.1/6461-6351 132908:Pteropus vampyrus
(large flying fox)
Length = 111
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 51 tcaggttgctcactgttcttccctagaatgtcaggtgatg 90
|||||||| |||| | | ||||||||||||||||||||||
Sbjct: 61 tcaggttgttcaccgcttttccctagaatgtcaggtgatg 100
>RF02014;mir-1178;ACBE01380273.1/1064-1172 9685:Felis catus
(domestic cat)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 51 tcaggttgctcactgttcttccctagaatgtcaggtgatg 90
|||||||| |||||| | ||||| ||||||||||||||||
Sbjct: 59 tcaggttgttcactgcttttccccagaatgtcaggtgatg 98
>RF02014;mir-1178;AAQQ01619158.1/1300-1197 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 51 tcaggttgctcactgttcttccctagaatgtcaggtgatg 90
||||| || |||||| ||| ||||||||||||||||||||
Sbjct: 54 tcagggtgttcactgctctcccctagaatgtcaggtgatg 93
>RF02014;mir-1178;AAPE01065295.1/1454-1343 59463:Myotis lucifugus
(little brown bat)
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 ttccctagaatgtcaggtgatg 90
||||||||||||||||||||||
Sbjct: 80 ttccctagaatgtcaggtgatg 101
>RF02014;mir-1178;AAPY01651911.1/3160-3048 37347:Tupaia belangeri
(northern tree shrew)
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 gttcttccctagaatgtcaggtgatg 90
||||||| ||||||||||||||||||
Sbjct: 77 gttcttctctagaatgtcaggtgatg 102
