miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29059_hsa-mir-1197:mirbase
Length = 88
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 cttcctggtatttgaagatgcggttgaccatggtgtgtacgctttatttgtgacgtagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cttcctggtatttgaagatgcggttgaccatggtgtgtacgctttatttgtgacgtagga 61
Query: 61 cacatggtctacttcttctcaatatca 87
|||||||||||||||||||||||||||
Sbjct: 62 cacatggtctacttcttctcaatatca 88
>31285_ppy-mir-1197:mirbase
Length = 88
Score = 165 bits (83), Expect = 6e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 cttcctggtatttgaagatgcggttgaccatggtgtgtacgctttatttgtgacgtagga 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2 cttcctggtatttgaagatgcggttgaccatggtgtgtacgctttatttatgacgtagga 61
Query: 61 cacatggtctacttcttctcaatatca 87
|||||||||||||||||||||||||||
Sbjct: 62 cacatggtctacttcttctcaatatca 88
>32392_mmu-mir-1197:mirbase
Length = 120
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 7 ggtatttgaagatgcggttgaccatggtgtgtacgctttatttgtgacgtaggacacatg 66
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 31 ggtatttgaagatgcggttgaccatggtgtgtacgctttatttatgacgtaggacacatg 90
Query: 67 gtctacttcttctcaatatca 87
|||||||||||||||||||||
Sbjct: 91 gtctacttcttctcaatatca 111
>33470_bta-mir-1197:mirbase
Length = 97
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 1 cttcctggtatttgaagatgcggttgaccatggtgtgtacgctttatttgtgacgtagga 60
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 cttcctggtatttgaagacgcggttgaccatggtgtgtacgctttatttatgacgtagga 60
Query: 61 cacatggtctacttcttctcaatatca 87
|||||||||||||||||||| ||||||
Sbjct: 61 cacatggtctacttcttctcgatatca 87
>33886_oar-mir-1197:mirbase
Length = 129
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 1 cttcctggtatttgaagatgcggttgaccatggtgtgtacgctttatttgtgacgtagga 60
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 19 cttcctggtatttgaagacgcggttgaccatggtgtgtacgctttatttatgacgtagga 78
Query: 61 cacatggtctacttcttctcaatatca 87
|||||||||||||||||||| ||||||
Sbjct: 79 cacatggtctacttcttctcgatatca 105
>33887_oar-mir-1197:mirbase
Length = 129
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 1 cttcctggtatttgaagatgcggttgaccatggtgtgtacgctttatttgtgacgtagga 60
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 19 cttcctggtatttgaagacgcggttgaccatggtgtgtacgctttatttatgacgtagga 78
Query: 61 cacatggtctacttcttctcaatatca 87
|||||||||||||||||||| ||||||
Sbjct: 79 cacatggtctacttcttctcgatatca 105
>27285_eca-mir-1197:mirbase
Length = 120
Score = 141 bits (71), Expect = 9e-35
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 1 cttcctggtatttgaagatgcggttgaccatggtgtgtacgctttatttgtgacgtagga 60
|||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 25 cttcatggtatttgaagatgcggttgaccatgctgtgtacgctttatttatgacgtagga 84
Query: 61 cacatggtctacttcttctcaatatca 87
|||||||||||||||| ||||||||||
Sbjct: 85 cacatggtctacttctcctcaatatca 111
