miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGW01360474.1/6624-6703 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 7 ggtatttgaagatgcggttgaccatggtgtgtacgctttatttgtgacgtaggacacatg 66
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ggtatctgaagatgcggttgaccatggtgtgtacgctttatctgtgacgtaggacacatg 60
Query: 67 gtctacttcttctcaatatc 86
||||||||||||||||||||
Sbjct: 61 gtctacttcttctcaatatc 80
>RF00641;mir-154;ABRR01339481.1/284-363 30538:Lama pacos (alpaca)
Length = 80
Score = 107 bits (54), Expect = 2e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 17 gatgcggttgaccatggtgtgtacgctttatttgtgacgtaggacacatggtctacttct 76
|||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 11 gatgcggtcgaccatggtgtgcacgctttatttgcgacgtaggacacatggtctacttct 70
Query: 77 tctcaatatc 86
|||| |||||
Sbjct: 71 tctcgatatc 80
>RF00641;mir-154;AAGU02503119.1/624-702 9785:Loxodonta africana
(African savanna elephant)
Length = 79
Score = 101 bits (51), Expect = 1e-21
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 16 agatgcggttgaccatggtgtgtacgctttatttgtgacgtaggacacatggtctacttc 75
||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 10 agatgcggtcgaccatg-tgtgtacgctttatttacgacgtaggacacatggtctacttc 68
Query: 76 ttctcaatatc 86
|||||||||||
Sbjct: 69 ttctcaatatc 79
