miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02023;mir-1208;AANU01107820.1/3290-3362 9544:Macaca mulatta
(rhesus monkey)
Length = 73
Score = 117 bits (59), Expect = 2e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 accggcagaatcactgttcagacaggcggagacgggtctttctcgccctctgatgagtca 60
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 2 accggcagaatcactgttcagacaggcggagacgggtctttcttgccatctgatgagtca 61
Query: 61 ccactgtggtg 71
||||||||||
Sbjct: 62 tcactgtggtg 72
>RF02023;mir-1208;ABDC01076655.1/1614-1685 30608:Microcebus
murinus (gray mouse lemur)
Length = 72
Score = 75.8 bits (38), Expect = 6e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 8 gaatcactgttcagacaggcggagacgggtctttctcgccctctgatgagtcaccactgt 67
|||||||||| ||||||||| ||||||||||||||| |||||||||||| ||| | ||||
Sbjct: 8 gaatcactgtgcagacaggctgagacgggtctttcttgccctctgatgaatcagcgctgt 67
Query: 68 gg 69
||
Sbjct: 68 gg 69
>RF02023;mir-1208;AAWR02021560.1/209322-209395 9796:Equus caballus
(horse)
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 4 ggcagaatcactgttcagacaggcggagacgggtctttctcgccctctgatgagtca 60
|||||||||||||||||||||||| ||||| |||| || | || ||||||||||||
Sbjct: 5 ggcagaatcactgttcagacaggctgagacaggtcctttccaccatctgatgagtca 61
>RF02023;mir-1208;ABRR01052556.1/1405-1478 30538:Lama pacos
(alpaca)
Length = 74
Score = 52.0 bits (26), Expect = 9e-07
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 4 ggcagaatcactgttcagacaggcggagacgggtctttctcgccctctgatgagtcacca 63
|||||||||||||| ||||||||| ||||| || | ||||| || |||| ||||||| |
Sbjct: 5 ggcagaatcactgtgcagacaggctgagacaggcccttctcaccatctggtgagtcatga 64
Query: 64 ctgtgg 69
||||||
Sbjct: 65 ctgtgg 70
>RF02023;mir-1208;ABRO01054249.1/664-736 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 73
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ggcagaatcactgttcagacaggcggagac 33
||||||| |||||||||||||||| |||||
Sbjct: 5 ggcagaaccactgttcagacaggctgagac 34
>RF02023;mir-1208;AAQR01056094.1/200-271 30611:Otolemur garnettii
(small-eared galago)
Length = 72
Score = 42.1 bits (21), Expect = 9e-04
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 8 gaatcactgttcagacaggcggagacgggtctttctcgccctctgatgagtcaccactgt 67
|||||||||| |||| ||| ||||| |||| |||| || |||||||| ||||||||||
Sbjct: 8 gaatcactgtgcagatgggctgagacaggtccctctcaccatctgatgaatcaccactgt 67
Query: 68 g 68
|
Sbjct: 68 g 68
>RF02023;mir-1208;AAQQ01553964.1/228-300 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 73
Score = 42.1 bits (21), Expect = 9e-04
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 9 aatcactgttcagacaggcggagacgggtctttctcgccctctgatgagtcac 61
||||||||||| ||||||| ||||| |||| ||| ||| |||||||||||||
Sbjct: 11 aatcactgttccgacaggctgagacaggtc-ctctggccatctgatgagtcac 62
