miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00942;mir-1224;CABD01015108.1/8228-8312 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 85
Score = 168 bits (85), Expect = 7e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggtgccgccggggccgggcgctgtttcagctcgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgccgccggggccgggcgctgtttcagctcgctt 60
Query: 61 ctccccccacctcctctctcctcag 85
|||||||||||||||||||||||||
Sbjct: 61 ctccccccacctcctctctcctcag 85
>RF00942;mir-1224;ABDC01030158.1/9889-9974 30608:Microcebus
murinus (gray mouse lemur)
Length = 86
Score = 91.7 bits (46), Expect = 1e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggtgccgccggggccggg-cgctgtttcagctcgct 59
|||||||||||||||||||||||||| || | ||||| || |||||| | ||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcatcgtcagggcctggacgctgtcttagctcgct 60
Query: 60 tctccccccacctcctctctcctcag 85
||||||||||||||||||||||||||
Sbjct: 61 tctccccccacctcctctctcctcag 86
>RF00942;mir-1224;ABRQ01131005.1/1760-1845 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 91.7 bits (46), Expect = 1e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggtgccgccggggcc-gggcgctgtttcagctcgct 59
|||||||||||||||||||||||||||| | || ||||| |||| | || ||||| ||||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgtcaccagggccagggcacagtctcagcgcgct 60
Query: 60 tctccccccacctcctctctcctcag 85
|||||||||||||||||||||||||
Sbjct: 61 cctccccccacctcctctctcctcag 86
>RF00942;mir-1224;AAPY01267440.1/1166-1249 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 81.8 bits (41), Expect = 1e-15
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggtgccgccggggccgggcgctgtttcagctcgctt 60
||||||||||||||||||||||| || | |||| ||||||||||| || ||||| ||| |
Sbjct: 1 gtgaggactcgggaggtggagggcggcgtcgccagggccgggcgccgtctcagcccgc-t 59
Query: 61 ctccccccacctcctctctcctcag 85
| ||||||||||||||||||||||
Sbjct: 60 cgtcccccacctcctctctcctcag 84
>RF00942;mir-1224;ABRO01220388.1/4019-4105 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 87
Score = 77.8 bits (39), Expect = 2e-14
Identities = 77/87 (88%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggtgccgccggggcc-gggcgctgtttcagctcgct 59
|||||||||||||||||||||||||| | ||| ||||| ||| || | ||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcgttgccagggccagggtgccatctcagctcgct 60
Query: 60 tctcccc-ccacctcctctctcctcag 85
||||||| |||||||||||||||||||
Sbjct: 61 tctcccccccacctcctctctcctcag 87
>RF00942;mir-1224;AAGV020421475.1/1984-2069 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 86
Score = 75.8 bits (38), Expect = 8e-14
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggtgccgccggggccgggcgctgtttcagctcgctt 60
|||||||||||||||||||||||||| | |||||||||| ||| |||| ||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcctcttgagggccgggcgttgtctcagttcgctt 60
Query: 61 ct-ccccccacctcctctctcctcag 85
|| |||||||||||||||||||||||
Sbjct: 61 cttccccccacctcctctctcctcag 86
>RF00942;mir-1224;AAQQ01259737.1/1179-1264 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 86
Score = 67.9 bits (34), Expect = 2e-11
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggtgccgccggggccgg-gcgctgtttcagctcgct 59
|||||||||||||||||||||||| ||| | || | || | | | ||| ||||||| ||
Sbjct: 1 gtgaggactcgggaggtggagggtagtgtcaccagagctagagtgatgtctcagctcact 60
Query: 60 tctccccccacctcctctctcctcag 85
||||||||||||||||||||||||||
Sbjct: 61 tctccccccacctcctctctcctcag 86
>RF00942;mir-1224;AAYZ01168547.1/11688-11773 9978:Ochotona
princeps (American pika)
Length = 86
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 44 gctgtttcagctcgcttctccccccacctcctctctcctcag 85
||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 45 gctgtctcaactcgcttctccccccacctcctctctcctcag 86
>RF00942;mir-1224;AAIY01561587.1/204-118 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 56.0 bits (28), Expect = 7e-08
Identities = 73/87 (83%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggtgccgccggggc--cgggcgctgtttcagctcgc 58
||||||||| ||||||||||||| || | ||||| | ||||||| || |||||||||
Sbjct: 1 gtgaggacttgggaggtggagggcggcgtggccggcccggcgggcgccgtctcagctcgc 60
Query: 59 ttctccccccacctcctctctcctcag 85
| |||||||||||||||||||||||
Sbjct: 61 cgcgccccccacctcctctctcctcag 87
>RF00942;mir-1224;AAKN02012305.1/10525-10613 10141:Cavia porcellus
(domestic guinea pig)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 tccccccacctcctctctcctcag 85
||||||||||||||||||||||||
Sbjct: 66 tccccccacctcctctctcctcag 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggaggg 23
|||||||||||||||||||||||
Sbjct: 1 gtgaggactcgggaggtggaggg 23
>RF00942;mir-1224;BC125016.1/1418-1502 10090:Mus musculus (house
mouse)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 tctccccccacctcctctctcctcag 85
|||||||||||||| |||||||||||
Sbjct: 60 tctccccccacctcttctctcctcag 85
