miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29085_hsa-mir-1244-1:mirbase
Length = 85
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 atcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 atcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtag 60
Query: 61 ttggtttgtatgagatggttaaaa 84
||||||||||||||||||||||||
Sbjct: 61 ttggtttgtatgagatggttaaaa 84
>29086_hsa-mir-1244-2:mirbase
Length = 85
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 atcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 atcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtag 60
Query: 61 ttggtttgtatgagatggttaaaa 84
||||||||||||||||||||||||
Sbjct: 61 ttggtttgtatgagatggttaaaa 84
>29087_hsa-mir-1244-3:mirbase
Length = 85
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 atcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 atcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtag 60
Query: 61 ttggtttgtatgagatggttaaaa 84
||||||||||||||||||||||||
Sbjct: 61 ttggtttgtatgagatggttaaaa 84
>30659_ptr-mir-1244-11:mirbase
Length = 84
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 atcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 atcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtag 60
Query: 61 ttggtttgtatgagatggttaaaa 84
||||||||||||||||||||||||
Sbjct: 61 ttggtttgtatgagatggttaaaa 84
>30666_ptr-mir-1244-8:mirbase
Length = 84
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 atcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 atcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtag 60
Query: 61 ttggtttgtatgagatggttaaaa 84
||||||||||||||||||||||||
Sbjct: 61 ttggtttgtatgagatggttaaaa 84
>31304_ppy-mir-1244:mirbase
Length = 85
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 atcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 atcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtag 60
Query: 61 ttggtttgtatgagatggttaaaa 84
||||||||||||||||||||||||
Sbjct: 61 ttggtttgtatgagatggttaaaa 84
>30660_ptr-mir-1244-2:mirbase
Length = 84
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 2 tcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtagt 61
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
Query: 62 tggtttgtatgagatggttaaaa 84
|||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaa 83
>30661_ptr-mir-1244-3:mirbase
Length = 84
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 2 tcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtagt 61
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
Query: 62 tggtttgtatgagatggttaaaa 84
|||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaa 83
>30663_ptr-mir-1244-5:mirbase
Length = 84
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 2 tcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtagt 61
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
Query: 62 tggtttgtatgagatggttaaaa 84
|||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaa 83
>30664_ptr-mir-1244-6:mirbase
Length = 84
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 2 tcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtagt 61
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
Query: 62 tggtttgtatgagatggttaaaa 84
|||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaa 83
>30657_ptr-mir-1244-1:mirbase
Length = 84
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 2 tcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtagt 61
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 1 tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactgtaagtagt 60
Query: 62 tggtttgtatgagatggttaaaa 84
|||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaa 83
>30658_ptr-mir-1244-10:mirbase
Length = 84
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 2 tcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtagt 61
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 1 tcttattccgagcattccagtaacttttttgcgtatgtacttagctgtactataagtagt 60
Query: 62 tggtttgtatgagatggttaaaa 84
|||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaa 83
>30665_ptr-mir-1244-7:mirbase
Length = 84
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 2 tcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtagt 61
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tcttattctgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
Query: 62 tggtttgtatgagatggttaaaa 84
|||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaa 83
>30667_ptr-mir-1244-9:mirbase
Length = 84
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 2 tcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtagt 61
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 1 tcttattccgagcattccagtaacttttttgtgtatatacttagctgtactataagtagt 60
Query: 62 tggtttgtatgagatggttaaaa 84
|||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaa 83
>27287_eca-mir-1244:mirbase
Length = 71
Score = 79.8 bits (40), Expect = 3e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 14 cattccagtaacttt-tttgtgtatgtactcagctgtactataagtagttggtttgtatg 72
||||||||||||||| |||| |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 4 cattccagtaactttctttgcatatgtacttagctgtactatgagtggttggtttgtatg 63
Query: 73 agatggtt 80
||||||||
Sbjct: 64 agatggtt 71
