miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29103_hsa-mir-1255b-2:mirbase
Length = 67
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 cttacggatgagcaaagaaagtggtttgcgcctcaagaaaccactttctttgctcatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cttacggatgagcaaagaaagtggtttgcgcctcaagaaaccactttctttgctcatcca 61
Query: 61 taagga 66
||||||
Sbjct: 62 taagga 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 38 aaaccactttctttgctcatccataag 64
|||||||||||||||||||||| ||||
Sbjct: 28 aaaccactttctttgctcatccgtaag 2
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cttacggatgagcaaagaaagtggttt 27
|||| ||||||||||||||||||||||
Sbjct: 65 cttatggatgagcaaagaaagtggttt 39
>31317_ppy-mir-1255b-2:mirbase
Length = 67
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 cttacggatgagcaaagaaagtggtttgcgcctcaagaaaccactttctttgctcatcca 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2 cttacggatgagcaaagaaagtggtttgcgcctcaagaagccactttctttgctcatcca 61
Query: 61 taagga 66
||||||
Sbjct: 62 taagga 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 38 aaaccactttctttgctcatccataag 64
|||||||||||||||||||||| ||||
Sbjct: 28 aaaccactttctttgctcatccgtaag 2
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 cttacggatgagcaaagaaagtgg 24
|||| |||||||||||||||||||
Sbjct: 65 cttatggatgagcaaagaaagtgg 42
>31316_ppy-mir-1255b-1:mirbase
Length = 60
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 34 caagaaaccactttctttgctcatcc 59
||||||||||||||||||||||||||
Sbjct: 26 caagaaaccactttctttgctcatcc 1
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 ggatgagcaaagaaagtggttt 27
||||||||||||||||||||||
Sbjct: 1 ggatgagcaaagaaagtggttt 22
>29102_hsa-mir-1255b-1:mirbase
Length = 63
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 tacggatgagcaaagaaagtggttt 27
|||||||||||||||||||||||||
Sbjct: 1 tacggatgagcaaagaaagtggttt 25
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 35 aagaaaccactttctttgctcatcc 59
|||||||||||||||||||||||||
Sbjct: 28 aagaaaccactttctttgctcatcc 4
>27289_eca-mir-1255b:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3 tacggatgagcaaagaaagtggttt 27
||||||| |||||||||||||||||
Sbjct: 1 tacggataagcaaagaaagtggttt 25
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 35 aagaaaccactttctttgctcatcc 59
|||||||||||||||||||| ||||
Sbjct: 28 aagaaaccactttctttgcttatcc 4
