miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00994;mir-1255;ABRR01456339.1/1038-1103 30538:Lama pacos
(alpaca)
Length = 66
Score = 60.0 bits (30), Expect = 3e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 19 aagtggtttgcgcctcaagaaaccactttctttgctcatccataag 64
||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct: 47 aagtggtttccatctcaggaaaccactttctttgctcatccataag 2
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 cttacggatgagcaaagaaagtggttt 27
|||| ||||||||||||||||||||||
Sbjct: 2 cttatggatgagcaaagaaagtggttt 28
>RF00994;mir-1255;AAGU02483741.1/5853-5918 9785:Loxodonta africana
(African savanna elephant)
Length = 66
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 32 ctcaagaaaccactttctttgctcatcca 60
|||||||||||||||||||||||||||||
Sbjct: 34 ctcaagaaaccactttctttgctcatcca 6
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 ggatgagcaaagaaagtggttt 27
||||||||||||||||||||||
Sbjct: 7 ggatgagcaaagaaagtggttt 28
>RF00994;mir-1255;AAWR02037001.1/98951-98886 9796:Equus caballus
(horse)
Length = 66
Score = 52.0 bits (26), Expect = 8e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 32 ctcaagaaaccactttctttgctcatccat 61
|||||||||||||||||||||| |||||||
Sbjct: 34 ctcaagaaaccactttctttgcccatccat 5
>RF00994;mir-1255;AANG01452839.1/249-184 9685:Felis catus
(domestic cat)
Length = 66
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 32 ctcaagaaaccactttctttgctcatccataag 64
|||| ||||| ||||||||||||||||||||||
Sbjct: 34 ctcaggaaactactttctttgctcatccataag 2
>RF00994;mir-1255;AAGU02590879.1/464-529 9785:Loxodonta africana
(African savanna elephant)
Length = 66
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 32 ctcaagaaaccactttctttgctcatccataag 64
||||||||||||||| ||||||||||||||||
Sbjct: 34 ctcaagaaaccacttcttttgctcatccataag 2
>RF00994;mir-1255;AAGU02568188.1/5623-5558 9785:Loxodonta africana
(African savanna elephant)
Length = 66
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 33 tcaagaaaccactttctttgctcatccataag 64
||||||||| |||||||| |||||||||||||
Sbjct: 33 tcaagaaactactttcttcgctcatccataag 2
