miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31331_ppy-mir-1271:mirbase
Length = 86
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 acccagatcagtgcttggcacctagcaagcactcagtaaatacttgttgagtgcctgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 acccagatcagtgcttggcacctagcaagcactcagtaaatacttgttgagtgcctgcta 61
Query: 61 tgtgccaggcattgtgctgaggg 83
|||||||||||||||||||||||
Sbjct: 62 tgtgccaggcattgtgctgaggg 84
>29122_hsa-mir-1271:mirbase
Length = 86
Score = 157 bits (79), Expect = 2e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 1 acccagatcagtgcttggcacctagcaagcactcagtaaatacttgttgagtgcctgcta 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 acccagatcagtgcttggcacctagcaagcactcagtaaatatttgttgagtgcctgcta 61
Query: 61 tgtgccaggcattgtgctgaggg 83
|||||||||||||||||||||||
Sbjct: 62 tgtgccaggcattgtgctgaggg 84
>33478_bta-mir-1271:mirbase
Length = 86
Score = 141 bits (71), Expect = 9e-35
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 1 acccagatcagtgcttggcacctagcaagcactcagtaaatacttgttgagtgcctgcta 60
||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct: 2 acccagatcagtgcttggcacctagtaagtactcagtatatacttgttgagtgcctgcta 61
Query: 61 tgtgccaggcattgtgctgaggg 83
|||||||||||||||||||||||
Sbjct: 62 tgtgccaggcattgtgctgaggg 84
>34141_ssc-mir-1271:mirbase
Length = 78
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 5 agatcagtgcttggcacctagcaagcactcagtaaatacttgttgagtgcctgctatgtg 64
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 2 agatcagtgcttggcacctagtaagcactcagtatatacttgttgagtgcctgctatgtg 61
Query: 65 ccaggcattgtgctgag 81
|||||||||||||||||
Sbjct: 62 ccaggcattgtgctgag 78
>26913_cfa-mir-1271:mirbase
Length = 58
Score = 107 bits (54), Expect = 1e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 14 cttggcacctagcaagcactcagtaaatacttgttgagtgcctgctatgtgccaggca 71
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttggcacctagtaagcactcagtaaatacttgttgagtgcctgctatgtgccaggca 58
>27292_eca-mir-1271:mirbase
Length = 57
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 14 cttggcacctagcaagcactcagtaaatacttgttgagtgcctgctatgtgccaggc 70
|||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 cttggcacctcgtaagcactcagtaaatacttgttgagtgcctgctgtgtgccaggc 57
